clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Viewer error for 'no processing' data #29

Closed clairelbromley closed 7 years ago

clairelbromley commented 7 years ago

Some of the data when it hasn't been processed at all, the software hasn't been able to find a single edge - therefore there is no 'speed against cut position' file.

This means that the data is unable to load. I will need to get out the data from these for the processing quantification. Would it be possible to make the viewer just put in a blank frame so I can still get stats on the fact that no edge was found?

screen shot 2016-09-22 at 14 52 59

Date = 240716, Embryo = 1, Cut = 1 MException with properties:

identifier: 'MATLAB:load:couldNotReadFile'
   message: 'Unable to read file '/Volumes/Arthur/DATA etc/CUTS/Vienna 2/analysis of image processing method/output NO processing/Apical/24...'
     cause: {0x1 cell}
     stack: [13x1 struct]

MException with properties:

identifier: 'MATLAB:nonExistentField'
   message: 'Reference to non-existent field 'poss'.'
     cause: {}
     stack: [8x1 struct]

8x1 struct array with fields:

file
name
line

Error using disp Too many input arguments.

Error in viewerMain>listData_Callback (line 418) disp(ME.stack.name);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('listData_Callback',hObject,eventdata,guidata(hObject))

Error in viewerMain>menuLoadData_Callback (line 187) callback(handles.listData, []);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('menuLoadData_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uimenu Callback

clairelbromley commented 7 years ago

https://drive.google.com/drive/folders/0B5BMTPgxKjfcaUZ6eVZQejd4alE?usp=sharing

clairelbromley commented 7 years ago

Date = 240716, Embryo = 1, Cut = 1 MException with properties:

identifier: 'MATLAB:load:couldNotReadFile'
   message: 'Unable to read file '/Users/clairebromley/Google Drive/no processing file - delete after use/240716, Embryo 1 upwards/240716, Embryo 1, Cu...'
     cause: {0x1 cell}
     stack: [13x1 struct]

MException with properties:

identifier: 'MATLAB:nonExistentField'
   message: 'Reference to non-existent field 'poss'.'
     cause: {}
     stack: [8x1 struct]

8x1 struct array with fields:

file
name
line

Error using disp Too many input arguments.

Error in viewerMain>listData_Callback (line 418) disp(ME.stack.name);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('listData_Callback',hObject,eventdata,guidata(hObject))

Error in viewerMain>menuLoadData_Callback (line 187) callback(handles.listData, []);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('menuLoadData_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uimenu Callback

clairelbromley commented 7 years ago

Finally figured out why it is crashing...

screen shot 2016-09-30 at 11 30 37

Basically for some of the 'not processed' data, only one side out of up or down has a graph. In this case, whether opened on its own or with other kymographs it doesn't work.

Error message Date = 240716, Embryo = 20, Cut = 1 MException with properties:

identifier: 'MATLAB:load:couldNotReadFile'
   message: 'Unable to read file '/Users/Claire/Google Drive/no processing file - delete after use/test2/240716, Embryo 20 downwards/240716...'
     cause: {0x1 cell}
     stack: [13x1 struct]

Cell contents reference from a non-cell array object.

Error in viewerMain>axUpSpeedVPosition_ButtonDownFcn (line 573) x = abs(handles.poss{ax} - xpos);

Error while evaluating line ButtonDownFcn

clairelbromley commented 7 years ago

https://drive.google.com/drive/folders/0B5BMTPgxKjfcMzd1N2ktTFRXS1E?usp=sharing

clairelbromley commented 7 years ago

In the above link can find data examples for the above issue