clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Viewer crashing - below error message was in command window #41

Closed clairelbromley closed 7 years ago

clairelbromley commented 7 years ago

Date = 280716, Embryo = 11, Cut = 1 Error using ancestor Not enough input arguments.

Error in imroi/parseInputsForCreateMask (line 77) h_ax = ancestor(obj.h_group,'axes');

Error in imroi/createMask (line 244) [obj,h_im] = parseInputsForCreateMask(varargin{:});

Error in manualSpeedFreehand (line 47) correct_membrane = false(size(M.createMask));

Error in viewerMain>figure1_WindowKeyPressFcn (line 1841) [figurePath, handles.currentManualLineSpeed] = manualSpeedFreehand(handles, get(handles.kymIm(axind), 'CData'));

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('figure1_WindowKeyPressFcn',hObject,eventdata,guidata(hObject))

Error while evaluating figure WindowKeyPressFcn

Error using viewerMain>showDamageIcon (line 2500) Not enough input arguments.

Error in viewerMain>listData_Callback (line 208) showDamageIcon(handles.damagedSideList{get(handles.listData, 'Value')}, handles);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('listData_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uicontrol Callback

Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid

clairelbromley commented 7 years ago

Viewer largely went blank - error message shown above

screen shot 2016-11-21 at 16 25 22

clairelbromley commented 7 years ago

Date = 280716, Embryo = 1, Cut = 1 0 0 0

MException with properties:

identifier: 'MATLAB:hgload:RecursionDetected'
   message: 'File /Volumes/Arthur/DATA etc/CUTS/Vienna 2/Sorted raw data/processed/280716/280716, Embryo 1 downwards/280716, Em...'
     cause: {0x1 cell}
     stack: [6x1 struct]

Error using chckxy (line 42) There should be at least two data points.

Error in spline (line 53) [x,y,sizey,endslopes] = chckxy(x,y);

Error in manualSpeedFreehand (line 56) Y = round(spline(P1(:,1), P1(:,2), (min(P1(:,1)):max(P1(:,1)))));

Error in viewerMain>figure1_WindowKeyPressFcn (line 1841) [figurePath, handles.currentManualLineSpeed] = manualSpeedFreehand(handles, get(handles.kymIm(axind), 'CData'));

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('figure1_WindowKeyPressFcn',hObject,eventdata,guidata(hObject))

Error while evaluating figure WindowKeyPressFcn

Date = 280716, Embryo = 10, Cut = 1 Date = 280716, Embryo = 11, Cut = 1 Error using ancestor Not enough input arguments.

Error in imroi/parseInputsForCreateMask (line 77) h_ax = ancestor(obj.h_group,'axes');

Error in imroi/createMask (line 244) [obj,h_im] = parseInputsForCreateMask(varargin{:});

Error in manualSpeedFreehand (line 47) correct_membrane = false(size(M.createMask));

Error in viewerMain>figure1_WindowKeyPressFcn (line 1841) [figurePath, handles.currentManualLineSpeed] = manualSpeedFreehand(handles, get(handles.kymIm(axind), 'CData'));

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('figure1_WindowKeyPressFcn',hObject,eventdata,guidata(hObject))

Error while evaluating figure WindowKeyPressFcn

Error using viewerMain>showDamageIcon (line 2500) Not enough input arguments.

Error in viewerMain>listData_Callback (line 208) showDamageIcon(handles.damagedSideList{get(handles.listData, 'Value')}, handles);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in viewerMain (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)viewerMain('listData_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uicontrol Callback

Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid

In dialog at 87 In questdlg at 142 In viewerMain>exportWizard_Callback at 951 In gui_mainfcn at 95 In viewerMain at 42 In @(hObject,eventdata)viewerMain('exportWizard_Callback',hObject,eventdata,guidata(hObject)) Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid In dialog at 87 In questdlg at 142 In viewerMain>exportWizard_Callback at 951 In gui_mainfcn at 95 In viewerMain at 42 In @(hObject,eventdata)viewerMain('exportWizard_Callback',hObject,eventdata,guidata(hObject)) Export... Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid Warning: single-selection listbox control requires a scalar Value Control will not be rendered until all of its parameter values are valid

clairelbromley commented 7 years ago

was able to export the QC files as currently done