clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Bug when trying to open embryo in viewer #65

Closed clairelbromley closed 7 years ago

clairelbromley commented 7 years ago

Currently seems to be specific to E19C1 - so don't worry about this for now screen shot 2016-12-23 at 10 39 32

Date = 280716, Embryo = 19, Cut = 1 MException with properties:

identifier: 'MATLAB:emptyDotAssignment'
   message: 'A dot name structure assignment is illegal when the structure is empty.  Use a subscript on the structure.'
     cause: {}
     stack: [5x1 struct]

5x1 struct array with fields:

file
name
line

genericInclude 1690

clairelbromley commented 7 years ago

After pressing ok on error message, part of the embryo has been successfully loaded into the viewer

screen shot 2016-12-23 at 10 40 46

clairelbromley commented 7 years ago

Bug caused matlab to quit - will remove embryo from data loaded into viewer for now

Date = 280716, Embryo = 19, Cut = 1 MException with properties:

identifier: 'MATLAB:emptyDotAssignment'
   message: 'A dot name structure assignment is illegal when the structure is empty.  Use a subscript on the structure.'
     cause: {}
     stack: [6x1 struct]

6x1 struct array with fields:

file
name
line

genericInclude 1690

MException with properties:

identifier: 'MATLAB:samelen'
   message: 'Vectors must be the same lengths.'
     cause: {0x1 cell}
     stack: [5x1 struct]

Date = 280716, Embryo = 1b, Cut = 1 Date = 280716, Embryo = 1b, Cut = 1 MException with properties:

identifier: 'MATLAB:hgload:RecursionDetected'
   message: 'File /Volumes/Arthur/DATA etc/CUTS/Vienna 2/Sorted raw data/processed/280716 longer kymo - 75/280716, Embryo 1b upwards/280716, Embryo 1b, Cut 1...'
     cause: {0x1 cell}
     stack: [8x1 struct]
clairelbromley commented 7 years ago

https://drive.google.com/drive/folders/0B5BMTPgxKjfcN212Ul8tZXkwR0k?usp=sharing

Google drive link to data (280716 E19)

dougkelly88 commented 7 years ago

Embryo 19 is missing from excel metadata: image