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clairelbromley / ZebrafishKymographing

Various software tools written for analysis of lumen opening and membrane retraction in zebrafish.
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Error message when generating tiffs #89

Open clairelbromley opened 7 years ago

clairelbromley commented 7 years ago

For earlier bleaching experiments, software seems unable to fill in frametime in czi fig

screen shot 2017-03-16 at 15 50 05

Think this may be what is producing the below error?

Error using bfGetPlane (line 61) The value of 'iPlane' is invalid. It must satisfy the function: @(x)isscalar(x)&&ismember(x,1:r.getImageCount()).

Error in cziFig>menuSaveBleachTiff_Callback (line 1513) gScale(100:99 + handles.reader.getSizeX, 100:99 + handles.reader.getSizeY) = ...

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in cziFig (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)cziFig('menuSaveBleachTiff_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uimenu Callback

screen shot 2017-03-16 at 15 48 05

NB: the czi files that don't have a frame time in the cziFig, have a strange duplicate in the metadata (see above image)

dougkelly88 commented 7 years ago

Can you put this data somewhere on drive so I can debug, please?