cziFig: z stack error - Githubissues

clairelbromley commented 7 years ago

Problem with cziFig:

When trying to create kymographs for lumen opening, kymographs come up blank when there is more than one z plane in the cziFig

clairelbromley commented 7 years ago

290416 embryo 1 cut 1 kymograph index along cut -1 downwards

clairelbromley commented 7 years ago

290416 embryo 1 cut 1 downwards cropped

clairelbromley commented 7 years ago

Building kymographs for 290416, Embryo 1 downwards, cut 1 Saving overlay images... Plotting kymographs for E1 C1 took 489.184311 seconds

result =

kym_number: 1

Non-finite endpoints or increment for colon operator in index

Error in extractQuantitativeKymographData (line 24) x = find(sum(squeeze(kyms(cut_frame:cut_frame+5,:,kpos))',1)==0);

Error in cziFig>buttonGenerateKym_Callback (line 283) results = extractQuantitativeKymographData(kymographs, curr_metadata, userOptions);

Error in gui_mainfcn (line 95) feval(varargin{:});

Error in cziFig (line 42) gui_mainfcn(gui_State, varargin{:});

Error in @(hObject,eventdata)cziFig('buttonGenerateKym_Callback',hObject,eventdata,guidata(hObject))

Error while evaluating uicontrol Callback

dougkelly88 commented 7 years ago

Check again in light of f62e58be17d57dba089b474d9ef5fe32d5418a87?

clairelbromley / ZebrafishKymographing