claraqin / neonMicrobe

Processing NEON soil microbe marker gene sequence data into ASV tables.
GNU Lesser General Public License v3.0
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Create paired-end options for the ITS sequence processing vignette #16

Open claraqin opened 4 years ago

claraqin commented 4 years ago

The current ITS sequence processing vignette only supports the processing of R1 sequences, following recommendations by Pauvert et al. (2019). This can be updated to handle paired-end merging by matching some of the code in the 16S sequence processing vignette.

This should be considered a secondary priority to completing vignettes that currently do not exist.