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clark-lab / ngsane

Analysis Framework for Biological Data from High Throughput Sequencing Experiments
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presence of runnow.tmp #20

Closed noncodo closed 11 years ago

noncodo commented 11 years ago

runnow.tmp should be created for each execution. Otherwise, it can cause problems when the "--keep" flag is used: a new subdirectory in /fastq/ will not be launched as old file names are present in runnow.tmp.

@ line ~52 of prepareJobSubmission.sh

if [ ! -e $QOUT/$TASK/runnow.tmp ]; then ..... if

should be removed unless someone can tell me why this is important?

Gurado commented 11 years ago

runnow.tmp has a function as providing the list of jobs for manual curation before submission