This PR will be associated with a major release.
It intends to:
reorganise the package, in particular the pipeline.py module will become a subpackage. The process and pipeline must be separated. Other pipelines could be added (ptycho/simulation pipelines?). Related plotting functions will be moved there.
Better handling of cpu => gpu => cpu jumps. See pyslurmutils.
Improve the single-machine use-case (i.e. without jumps)
Make the main bcdi_pipeline.ipynb notebook lighter, simpler.
Better import management, lazy imports added.
Miscellaneous changes: addition of new features such as :
plotting of strain statistics in the pipeline
the function to check the twin image problem in the API
new utility functions (ex: energy_to_wavelength to avoid importing xrayutilities...)
better management of pipeline plots, remove redundancy.
hot pixels and background removal in the pipeline (already effective in step_by_step_bcdi_analysis.ipynb)
This PR will be associated with a major release. It intends to:
pipeline.pymodule will become a subpackage. The process and pipeline must be separated. Other pipelines could be added (ptycho/simulation pipelines?). Related plotting functions will be moved there.pyslurmutils.bcdi_pipeline.ipynbnotebook lighter, simpler.energy_to_wavelengthto avoid importingxrayutilities...)step_by_step_bcdi_analysis.ipynb)All comments and suggestions are welcome.