clauswilke pinetree issues

clauswilke / pinetree

🌲 a flexible gene expression simulator with codon-specific translation rates

http://pinetree.readthedocs.io

MIT License

11 stars 5 forks source link

issues

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Release 0.4.0

#23 alexismhill3 closed 1 year ago
0
Update catch.hpp dependency to latest 2.x version

#22 alexismhill3 closed 1 year ago
0
Unable to install pinetree

#21 g-krik closed 1 year ago
6
Support for simulating transcription of a circular genome

#20 alexismhill3 closed 2 years ago
0
Update documentation to have copy_number instead of copies

#19 tijeco opened 3 years ago
0
Codon usage / translation frames

#18 jeffreybarrick opened 3 years ago
0
Support for multiple genomes

#17 jeffreybarrick opened 3 years ago
1
Change Travis build language to Python

#16 alexismhill3 closed 3 years ago
1
Prep for release 0.3.0

#15 alexismhill3 closed 3 years ago
0
Resolve a race condition in polymer::move that was causing Pinetree to throw an error when a termination site and binding site overlap

#14 alexismhill3 closed 4 years ago
0
Add a unit test so that we don't accidentally revert the race condition fix in polymer::move

#13 alexismhill3 opened 4 years ago
0
Pinetree should be able to handle overlapping genes

#12 alexismhill3 closed 4 years ago
1
Overlapping polymerase error

#11 alexismhill3 closed 4 years ago
4
fix 'and' operator syntax error in `feature.hpp`

#10 alexismhill3 closed 4 years ago
0
Support for individual rnase binding rates at internal sites

#9 alexismhill3 closed 4 years ago
0
Fix reference cycle that causes model objects to leak

#8 alexismhill3 closed 4 years ago
1
Polymer c++ unit tests

#7 alexismhill3 closed 4 years ago
0
Fixed Read the Docs build failure

#6 alexismhill3 closed 5 years ago
1
Read the Docs build is failing

#5 alexismhill3 closed 5 years ago
0
Fixed Travis setup

#4 alexismhill3 closed 5 years ago
2
Travis setup is broken

#3 clauswilke closed 5 years ago
0
I think the README file should point to the documentation.

#2 clauswilke closed 6 years ago
0
Lotka-Volterra test segfaults with sufficient time

#1 chipbuster closed 6 years ago
1