These are mostly minor updates to fix style issues.
Fix indenting
Remove some unnecessary commas
Update a few deprecated Matlab calls
A more substantial fix is to remove masking in ForestClaw when drawing contour lines. Patch masking (needed in AMRClaw, but not in ForestClaw) was being called in ForestClaw to mask contour lines on "covered" patches. This basically was hiding the entire patch, leaving holes in the patch in some cases.
These are mostly minor updates to fix style issues.
A more substantial fix is to remove masking in ForestClaw when drawing contour lines. Patch masking (needed in AMRClaw, but not in ForestClaw) was being called in ForestClaw to mask contour lines on "covered" patches. This basically was hiding the entire patch, leaving holes in the patch in some cases.