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clbarnes / jeiss-convert

Convert Jeiss .dat files to HDF5
MIT License
2 stars 2 forks source link

Zarr, N5 support #3

Open clbarnes opened 2 years ago

clbarnes commented 2 years ago

Not working yet, but unsure whether this should go in at all, as it's counter to the idea of one universal workflow. These files will almost certainly go through another round of processing (alignment, contrast correction etc.) which would be a more appropriate time for such an export.

Other points to consider:

clbarnes commented 2 years ago

N5 doesn't have the same flexibility as zarr for endianness and array order, which makes the roundtripping a bit more complicated.

clbarnes commented 2 years ago

Tests are extremely heavy on storage and RAM which causes problems.