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clbarnes / jeiss-specs

Specifications of output format for "Jeiss" FIBSEMs
MIT License
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v9 spec #6

Closed clbarnes closed 1 year ago

clbarnes commented 1 year ago

Thanks to the labview internal docs provided here https://github.com/JaneliaSciComp/jeiss_fibsem_labview_control/issues/11#issuecomment-1402995031 we have some idea of this. @trautmane also offered to take a look.

Compared to v8, there seems to be:

Additions:

dtype v9 offset v9 LabView doc
>u1 68 Restart flag
>u1 69 Stage move flag
>i4 70 X coordinate of the first pixel
>i4 74 Y coordinate of the first pixel
>S? 155 Sample ID

Subtractions:

dtype v8 offset MATLAB name
>f4 980 SEMSpecimenI

The existence of SEMSpecimenI at offset 980 is questionable, as it appears twice in the MATLAB code, even at v9: see https://github.com/JaneliaSciComp/jeiss_fibsem_labview_control/issues/11#issuecomment-1404896828

clbarnes commented 1 year ago

See #7

clbarnes commented 1 year ago

@trautmane Merged! Also updated jeiss-convert if you want to give it a try. I'd recommend holding off putting it into production until we finalise the names.

Would it be possible to make a v9 file public and add the location to example_files.tsv, then add just the header section to example_metadata/? Then it'll get folded into tests.

clbarnes commented 1 year ago

Merged