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clbarnes / nblast-py

Pure-python implementation of NBLAST, for experimentation purposes
GNU General Public License v3.0
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Improve performance #1

Open clbarnes opened 4 years ago

clbarnes commented 4 years ago

This implementation isn't intended for production, but it'd be nice if it were quicker to test.

Would almost certainly benefit from pandas.cut.

Use cKDTree rather than KDTree.

clbarnes commented 4 years ago

At present, it's about as fast as is reported in the NBLAST paper.