clemente-lab / mmeds-meta

A database for storing and analyzing omics data
https://mmeds.org
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Checks and info on uploaded sequencing runs #436

Open adamcantor22 opened 2 years ago

adamcantor22 commented 2 years ago

Is your feature request related to a problem? Please describe. We often encounter errors in the demultiplexing step that are due to inconsistencies or errors in sequencing runs, or the way we're processing them. We need to know this information as soon as possible.

Describe the solution you'd like When a run is uploaded, perform checks on it that will be deposited as text into the run's minerva directory. This should include info on N base pairs, matching between the files, and anything else we can think of.