codecov[bot]
commented
1 year ago Codecov Report
Patch coverage is 75.00% of modified lines.
| Files Changed | Coverage |
|---|---|
| mmeds/config.py | 0.00% |
| mmeds/summary.py | 100.00% |
:loudspeaker: Thoughts on this report? Let us know!.
Pull Request Template for MMEDS
What has changed
Added new conda environment option. Added option to run lefse non-hierarchically. Ensured that all 'stats' files end up in the summary directory when running summaries. Added script to upload sequencing run from command line.
Checklist of pre-requisites
This code is not tested, automated testing is broken :(
This is mainly so @circlespie can get a sense of how pull requests work.