clemente-lab / mmeds-meta

A database for storing and analyzing omics data
https://mmeds.org
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Generate and store sequencing run Qiime artifact immediately after run upload #464

Open adamcantor22 opened 5 months ago

adamcantor22 commented 5 months ago

Is your feature request related to a problem? Please describe. For every new study analysis, we first import as qiime artifacts every run that will be used in the analysis. This is pretty time-consuming, and the qiime artifact is the same every time.

Describe the solution you'd like Add to the process of sequencing run uploads, so that a qiime artifact is generated as soon as the run is available to MMEDS. Then update qiime analysis to just copy over the relevant artifacts, rather than regenerating them.