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clevercanary / data-browser

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Find cellxgene collections that link to data.humancellatlas.org where no link back exists from the DCP project to cellxgene #159

Open NoopDog opened 2 years ago

NoopDog commented 2 years ago

Need

We would like the Data Browser to have links to external portals that host a view of the project's data.

The current set of external portals are configured in project-edits.json. For example, this project is configured here.

The cellxgene Data Portal has "collections" that are similar in concept to the HCA DCP's projects.

Some collections such as this one have links back to the corresponding HCA DCP project:

image

We would like to find all cellxgene collections that reference a HCA DCP project and make sure the DCP project links back to the cellxgene collection.

Approach

  1. Identify cellxgene collections that point to a HCA DCP project Go to https://cellxgene.cziscience.com/collections and view the detail page of each collection in the collection list. Note the URL of each collection page that links to the HCA DCP in a Google Sheet. Also note the URL to the corresponding HCA DCP project.

  2. Check for HCA DCP projects that don't point to cellxgene For each HCA DCP link in the Google Sheet, check that the corresponding project lists a link back to cellxgene. You can see the link in the "Analysis Portals" section of the DCP projects detail page.

  3. Document HCA DCP projects with missing links to cellxgene If the HCA DCP page does not link back to the corresponding cellxgene project, note this in a column on the spreadsheet.

  4. Double check cellxgene collection and HCA DPC project details Check that the project and collection appear to have the same/similar title/authors and description text. If not, note this in the Google Sheet as well so we can review.

  5. Configure HCA DCP projects with missing links to cellxgene Modify project-edits.json to have entries for missing links back to cellxgene.

esthermcdade commented 2 years ago

@NoopDog This spreadsheet has the comparisons between the cellxgene portal and the HCA browser