clevercanary / hca-atlas-tracker

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Look into resolving more near-matches in title validation #323

Closed hunterckx closed 4 weeks ago

hunterckx commented 1 month ago

Look through existing tasks for cases that should match: https://tracker.data.humancellatlas.org/tasks?filter=%5B%7B%22categoryKey%22%3A%22description%22%2C%22value%22%3A%5B%22Update+project+title+to+match+publication+title.%22%5D%7D%5D

hunterckx commented 1 month ago

Pairs of titles that we may want to consider to be the same:

Single-cell transcriptomics reveals cell-type-specific diversification in human heart failure

Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human Heart Failure

Fails because punctuation is removed entirely for comparison, so here for example "singlecell" is compared to "single cell"

Pathogen-induced tissue-resident memory T H 17 (T RM 17) cells amplify autoimmune kidney disease

Pathogen-induced tissue-resident memory TH17 (TRM17) cells amplify autoimmune kidney disease

Probably can't be resolved without ignoring whitespace entirely ("T H 17" vs "TH17")

Single-cell RNA sequencing identifies celltype-specific cis-eQTLs and co-expression QTLs

Single-cell RNA sequencing identifies cell type-specific cis-eQTLs and co-expression QTLs

Also just a whitespace thing ("celltype" vs "cell-type")

Local and systemic responses to SARS-CoV-2 infection in children and adults

The local and systemic response to SARS-CoV-2 infection in children and adults

Very similar but one has an extra word so not sure if we'd even actually want to consider them the same

Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis

Single Cell RNA-seq reveals ectopic and aberrant lung resident cell populations in Idiopathic Pulmonary Fibrosis

Again, the issue with hyphens being ignored entirely

Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis

Single-cell RNA-sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis

Also hyphens

The single-cell transcriptomic landscape of early human diabetic nephropathy

The Single Cell Transcriptomic Landscape of Early Human Diabetic Nephropathy

Hyphens

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches

Hyphens

A single-cell atlas of human teeth

A single cell atlas of human teeth

Hyphens

hunterckx commented 1 month ago

Other than the questionable extra-word one the only two types of problems here are differences in use of spaces and hyphen vs space; both of these could be resolved by completely ignoring whitespace in the comparison, though of course that could theoretically lead to different sequences of words being considered the same

If we just wanted to solve the hyphen one..... well it would be possible of course to allow punctuation to match both spaces and absences of characters but I'm not sure what the simplest way would be

NoopDog commented 4 weeks ago

We will leave the current match as is. Closing!