Closed cliffren closed 1 year ago
This doesn't appear when using seurat 4.1.1, but appears in higher versions such as 4.3 due to naming conflicts. Thanks to Famingzhao for a solution.
sc_data[["umap"]] <- CreateDimReducObject(embeddings = as.matrix(sc_data@reductions$umap@cell.embeddings), key = "UMAPRaw", assay = "RNA")
In the R tutorial, the graphs generated from umap coordinates and umap-mvg2000 coordinates are the same.