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clij / clij2

GPU-accelerated image processing for everyone
https://clij.github.io/clij2
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replaced CONVERT_sum_PIXEL_TYPE with CONVERT_dst_PIXEL_TYPE #61

Closed schmiedc closed 2 years ago

schmiedc commented 2 years ago

replaced CONVERT_sum_PIXEL_TYPE with CONVERT_dst_PIXEL_TYPE in variance_projection_x.cl to fix: https://github.com/clij/clij2/issues/60 as per: https://github.com/clij/clij2/issues/60#issuecomment-1203182294

haesleinhuepf commented 2 years ago

Hey Christopher @schmiedc ,

thanks for this PR! Just to make sure: Did you test this? Is this solving the problem discussed in #60 ?

Thanks for confirming!

Best, Robert

schmiedc commented 2 years ago

Hi, you got me right there :D you need to tell me how to build this in IntelliJ.

haesleinhuepf commented 2 years ago

Like any other Fiji plugin ;-)

And you find a step-by-step guide here: https://clij.github.io/clij2-docs/development

schmiedc commented 2 years ago

Well the devil is in the details. Here is what happens:

[clij2]christopher.schmied@HL-PF39X1DQ$ mvn install -e [INFO] Error stacktraces are turned on. [INFO] Scanning for projects... [INFO] Inspecting build with total of 1 modules... [INFO] Installing Nexus Staging features: [INFO] ... total of 1 executions of maven-deploy-plugin replaced with nexus-staging-maven-plugin [INFO] [INFO] ----------------------< net.haesleinhuepf:clij2 >---------------------- [INFO] Building clij2 2.5.3.0 [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ clij2 --- [INFO] Skipping Rule Enforcement. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:regex-property (sanitize-version) @ clij2 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:regex-property (guess-package) @ clij2 --- [INFO] No match to regex '[^a-z0-9.]+' found in 'net.haesleinhuepf.clij2'. The initial value 'net.haesleinhuepf.clij2' is left as-is... [INFO] [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ clij2_ --- [INFO] Executing: /bin/sh -c cd '/home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2' && 'git' 'rev-parse' '--verify' 'HEAD' [INFO] Working directory: /home/christopher.schmied/HTDocs/Repositories/clijTest/clij2 [INFO] Storing buildNumber: 6f794c6cb708e89937ebebc4619a8b90761b8a1e at timestamp: 1659540860694 [INFO] Storing buildScmBranch: master [INFO] [INFO] --- scijava-maven-plugin:2.0.0:set-rootdir (set-rootdir) @ clij2 --- [INFO] Setting rootdir: /home/christopher.schmied/HTDocs/Repositories/clijTest/clij2 [INFO] [INFO] --- jacoco-maven-plugin:0.8.5:prepare-agent (jacoco-initialize) @ clij2 --- [INFO] argLine set to -javaagent:/home/christopher.schmied/.m2/repository/org/jacoco/org.jacoco.agent/0.8.5/org.jacoco.agent-0.8.5-runtime.jar=destfile=/home/christopher.schmied/HTDocs/Repositories/clijTest/clij2/target/jacoco.exec [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ clij2 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 322 resources [INFO] skip non existing resourceDirectory /home/christopher.schmied/HTDocs/Repositories/clijTest/clij2/src/test/java [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.1:compile (default-compile) @ clij2 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ clij2_ --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/christopher.schmied/HTDocs/Repositories/clijTest/clij2/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.1:testCompile (default-testCompile) @ clij2 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.4.1:test (default-test) @ clij2 --- [INFO] No tests to run. [INFO] [INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ clij2 --- [INFO] [INFO] >>> maven-source-plugin:2.2.1:jar (attach-sources-jar) > generate-sources @ clij2 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-rules) @ clij2 --- [INFO] Skipping Rule Enforcement. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:regex-property (sanitize-version) @ clij2 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:regex-property (guess-package) @ clij2 --- [INFO] No match to regex '[^a-z0-9.]+' found in 'net.haesleinhuepf.clij2'. The initial value 'net.haesleinhuepf.clij2' is left as-is... [INFO] [INFO] --- buildnumber-maven-plugin:1.4:create (default) @ clij2 --- [INFO] [INFO] --- scijava-maven-plugin:2.0.0:set-rootdir (set-rootdir) @ clij2 --- [INFO] [INFO] --- jacoco-maven-plugin:0.8.5:prepare-agent (jacoco-initialize) @ clij2 --- [INFO] argLine set to -javaagent:/home/christopher.schmied/.m2/repository/org/jacoco/org.jacoco.agent/0.8.5/org.jacoco.agent-0.8.5-runtime.jar=destfile=/home/christopher.schmied/HTDocs/Repositories/clijTest/clij2/target/jacoco.exec [INFO] [INFO] <<< maven-source-plugin:2.2.1:jar (attach-sources-jar) < generate-sources @ clij2 <<< [INFO] [INFO] [INFO] --- maven-source-plugin:2.2.1:jar (attach-sources-jar) @ clij2_ --- [INFO] Building jar: /home/christopher.schmied/HTDocs/Repositories/clijTest/clij2/target/clij2-2.5.3.0-sources.jar [INFO] [INFO] --- jacoco-maven-plugin:0.8.5:report (jacoco-site) @ clij2 --- [INFO] Skipping JaCoCo execution due to missing execution data file. [INFO] [INFO] --- maven-javadoc-plugin:2.9.1:jar (attach-javadocs) @ clij2 --- [INFO] Loading source files for package net.haesleinhuepf.clij2... Loading source files for package net.haesleinhuepf.clij2.converters.helptypes... Loading source files for package net.haesleinhuepf.clij2.converters.implementations... Loading source files for package net.haesleinhuepf.clij2.legacy... Loading source files for package net.haesleinhuepf.clij2.plugins... Loading source files for package net.haesleinhuepf.clij2.utilities... Constructing Javadoc information... Standard Doclet version 1.8.0_322 Building tree for all the packages and classes... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/AbstractCLIJ2Plugin.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/CLIJ2.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/CLIJ2Ops.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/helptypes/Byte1.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/helptypes/Byte2.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/helptypes/Byte3.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/helptypes/Char1.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/helptypes/Char2.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ConnectedComponentsLabeling.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ConnectedComponentsLabelingBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ConnectedComponentsLabelingDiamond.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ConvertFloat.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ConvertUInt16.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ConvertUInt8.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Convolve.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Copy.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CopySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Cosinus.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CountNonZeroPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CountNonZeroPixels2DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CountNonZeroPixelsSliceBySliceSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CountNonZeroVoxels3DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CountTouchingNeighbors.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Create2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Create3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Crop2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Crop3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CustomOperation.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/CylinderTransform.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DepthColorProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectLabelEdges.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMaxima2DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMaxima3DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMaximaBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMaximaSliceBySliceBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMinima2DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMinima3DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMinimaBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DetectMinimaSliceBySliceBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DifferenceOfGaussian2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DifferenceOfGaussian3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Different.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DilateBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DilateBoxSliceBySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DilateLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DilateSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DilateSphereSliceBySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DistanceMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DistanceMatrixToMesh.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DivideByGaussianBackground.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DivideImages.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DivideScalarByImage.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Downsample2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Downsample3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DownsampleSliceBySliceHalfMedian.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawDistanceMeshBetweenTouchingLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawLine.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawMeshBetweenNClosestLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawMeshBetweenNNearestLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawMeshBetweenProximalLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawMeshBetweenTouchingLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/DrawSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/EntropyBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Equal.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/EqualConstant.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/EqualizeMeanIntensitiesOfSlices.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ErodeBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ErodeBoxSliceBySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ErodeLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ErodeSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ErodeSphereSliceBySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/EuclideanDistanceFromLabelCentroidMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExcludeLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExcludeLabelsOnEdges.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExcludeLabelsOnSurface.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExcludeLabelsOutsideSizeRange.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExcludeLabelsSubSurface.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExcludeLabelsWithValuesOutOfRange.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExcludeLabelsWithValuesWithinRange.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Exponential.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExtendedDepthOfFocusSobelProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExtendedDepthOfFocusTenengradProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExtendedDepthOfFocusVarianceProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExtendLabelingViaVoronoi.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ExtensionRatioMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Flip2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Flip3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/FloodFillDiamond.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GammaCorrection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GaussianBlur2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GaussianBlur3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateBinaryOverlapMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateDistanceMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateJaccardIndexMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateNNearestNeighborsMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateParametricImage.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateParametricImageFromResultsTableColumn.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateProximalNeighborsMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateTouchCountMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GenerateTouchMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetAutomaticThreshold.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetBoundingBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetCenterOfMass.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetDimensions.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetGPUProperties.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetJaccardIndex.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetMaximumOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetMeanOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetMeanOfMaskedPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetMeanSquaredError.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetMinimumOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetSize.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetSorensenDiceCoefficient.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetSumOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GetTimeTracing.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GPUProperties.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GreyscaleClosingBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GreyscaleClosingSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GreyscaleOpeningBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/GreyscaleOpeningSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Help.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Histogram.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Image2DToResultsTable.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ImageToStack.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/InvalidateKernelCache.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Invert.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/JaccardIndex.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/LabelCentroidsToPointList.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Paste2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Paste3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PixelCountMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PointIndexListToMesh.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PointIndexListToTouchMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PointlistToLabelledSpots.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PullBinary.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PullLabelsToROIList.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PullLabelsToROIManager.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PullString.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PullTile.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PullToCurrentSlice.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushArray2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushAs.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushCurrentSelection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushCurrentSlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushCurrentSliceSelection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushCurrentZStack.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushResultsTable.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushResultsTableColumn.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushString.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/PushTile.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReadValuesFromMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReadValuesFromPositions.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReduceLabelsToCentroids.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReduceLabelsToLabelEdges.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReduceStack.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Release.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReplaceIntensities.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReplaceIntensity.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReplacePixelsIfZero.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReportMemory.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Resample.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResliceBottom.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResliceLeft.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ReslicePolar.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResliceRadial.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResliceRadialTop.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResliceRight.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResliceTop.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResultsTableColumnToImage.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ResultsTableToImage2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/RigidTransform.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Rotate2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Rotate3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/RotateClockwise.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/RotateCounterClockwise.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/RotateLeft.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/RotateRight.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/SaveAsTIF.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdMean.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdMinError.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdMinimum.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdMoments.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdOtsu.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdPercentile.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdRenyiEntropy.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdShanbhag.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdTriangle.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ThresholdYen.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TopHatBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TopHatSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TouchingNeighborCountMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TouchingNeighborDistanceRangeRatioMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TouchMatrixToAdjacencyMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TouchMatrixToMesh.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Translate2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Translate3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TransposeXY.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TransposeXZ.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/TransposeYZ.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/UndefinedToZero.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VarianceBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VarianceOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VarianceOfMaskedPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VarianceSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VisualizeOutlinesOnOriginal.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VoronoiLabeling.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VoronoiOctagon.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/VoronoiOtsuLabeling.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/Watershed.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/WithinIntensityRange.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/WriteValuesToPositions.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ZPositionOfMaximumZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ZPositionOfMinimumZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ZPositionProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/ZPositionRangeProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/CLIJ2MacroExtensions.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/CLIJUtilities.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/HasClassifiedInputOutput.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/ProcessableInTiles.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/overview-frame.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/package-frame.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Byte2ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToInteger3Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Char2ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Short2ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Float1ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToFloat2Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Short3ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Char3ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Byte3ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Integer1ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToFloat3Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToChar2Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Float3ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Double3ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Double2ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToByte2Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Double1ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToByte3Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Float2ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToShort2Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToDouble3Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToChar3Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToDouble2Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Integer3ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Short1ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/Char1ToClearCLBufferConverter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/class-use/ClearCLBufferToShort3Converter.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/legacy/class-use/FallBackCLIJMacroPluginService.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/legacy/class-use/FallBackCLIJMacroPluginServiceInitializer.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/legacy/class-use/CLIJLegacyMacroExtensions.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetBoundingBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushCurrentSliceSelection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ModeOfNNearestNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushCurrentZStack.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Paste2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetRampX.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SumZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GreaterOrEqual.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CountTouchingNeighbors.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NonzeroMinimumDiamond.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DivideScalarByImage.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/EqualConstant.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetMeanOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Power.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/VarianceBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/BinarySubtract.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DrawLine.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanZProjectionBounded.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Paste3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CentroidsOfLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ZPositionRangeProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StandardDeviationBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AddImages.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExcludeLabelsOnEdges.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Create2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Blur3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/VarianceOfMaskedPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/EuclideanDistanceFromLabelCentroidMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/LabelSpots.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SubStack.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MatrixEqual.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StandardDeviationOfNNearestNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ApplyVectorField3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StandardDeviationOfTouchingNeighbors.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MultiplyImageAndScalar.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Median2DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/BoundingBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/RotateClockwise.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExcludeLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PullToCurrentSlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushResultsTable.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ErodeSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Convolve.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushString.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GenerateParametricImage.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdOtsu.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MaximumIntensityMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ResliceRadialTop.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Pull.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ConvertFloat.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/BinaryXOr.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetMinimumOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetMeanOfMaskedPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StandardDeviationOfProximalNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushResultsTableColumn.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MedianSliceBySliceBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DrawMeshBetweenNClosestLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CombineHorizontally.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PixelCountMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DrawMeshBetweenProximalLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CountNonZeroPixelsSliceBySliceSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Resample.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DilateBoxSliceBySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/OpeningBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Smaller.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ClosingBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/JaccardIndex.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StatisticsOfLabelledPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StatisticsOfLabelledPixels.STATISTICS_ENTRY.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StartTimeTracing.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushArray2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DilateBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ResliceTop.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GreaterConstant.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Cosinus.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CloseIndexGapsInLabelMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CenterOfMass.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdRenyiEntropy.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MaximumZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SquaredDifference.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ReplaceIntensities.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DivideByGaussianBackground.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AverageDistanceOfNClosestPoints.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanOfMaskedPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DetectMaxima3DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdMinimum.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PowerImages.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetWhereXequalsY.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ClInfo.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NClosestDistances.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetMaximumOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumZProjectionThresholdedBounded.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/BottomHatBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdMaxEntropy.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Mean2DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ReduceLabelsToLabelEdges.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Maximum3DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Maximum2DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GradientZ.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdMinError.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetAutomaticThreshold.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumDistanceOfTouchingNeighbors.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Minimum3DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DetectMinimaBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/TenengradSliceBySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StandardDeviationOfTouchingNeighborsMap.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetGPUProperties.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SumOfAllPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdHuang.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Release.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExtendedDepthOfFocusSobelProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/VisualizeOutlinesOnOriginal.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ResliceRight.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumOfProximalNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetTimeTracing.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetWhereXsmallerThanY.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/VarianceSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Tenengrad.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ResultsTableColumnToImage.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MaximumOfMaskedPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PullAsROI.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanOfProximalNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DepthColorProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CountNonZeroVoxels3DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/UndefinedToZero.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DetectMinimaSliceBySliceBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MultiplyMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetColumn.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PullToROIManager.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/TouchingNeighborCountMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Sinus.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushCurrentSlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Pull2DPointListAsRoi.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/OnlyzeroOverwriteMaximumBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StackToTiles.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ResliceLeft.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SphereTransform.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AverageDistanceOfNClosestNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PullToResultsTable.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Clear.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Mask.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PullLabelsToROIManager.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Downsample2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushTile.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StandardDeviationZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ConnectedComponentsLabeling.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ConnectedComponentsLabelingBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetNonZeroPixelsToPixelIndex.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/VoronoiOctagon.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/LabelSurface.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumXProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Set.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/OpeningDiamond.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NonzeroMaximumBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AutomaticThreshold.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetRampY.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/TouchMatrixToMesh.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExcludeLabelsWithValuesOutOfRange.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DifferenceOfGaussian3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ZPositionProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ErodeBoxSliceBySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Equal.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdPercentile.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MultiplyStackWithPlane.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetWhereXgreaterThanY.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdIsoData.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumTouchingNeighborDistanceMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MedianZProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MakeIsotropic.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DetectLabelEdges.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CopySlice.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DrawMeshBetweenTouchingLabels.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Mean2DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Image2DToResultsTable.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ReslicePolar.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MedianOfTouchingNeighbors.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ReduceStack.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NotEqual.html... 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Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Rotate2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/RigidTransform.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GradientX.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AffineTransform2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NonzeroMinimumBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GreyscaleOpeningSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExtensionRatioMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/FloodFillDiamond.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/RotateCounterClockwise.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/RotateRight.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/LocalThreshold.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CountNonZeroPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumOfTouchingNeighbors.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Scale3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumIntensityMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdTriangle.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ProximalNeighborCountMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/TransposeYZ.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PointIndexListToTouchMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ConcatenateStacks.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CombineVertically.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumOfMaskedPixels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ReportMemory.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DetectMinima2DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GaussianBlur2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Minimum2DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExcludeLabelsOnSurface.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CylinderTransform.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ConvertUInt8.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DistanceMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/BinaryEdgeDetection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GenerateTouchCountMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MaximumExtensionMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetSorensenDiceCoefficient.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NotEqualConstant.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanExtensionMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ModeOfProximalNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MaximumOfTouchingNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AdjacencyMatrixToTouchMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AverageNeighborDistanceMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Invert.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/BinaryAnd.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PullBinary.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/EqualizeMeanIntensitiesOfSlices.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Median3DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SubtractImages.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AddImagesWeighted.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CountNonZeroPixels2DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumImageAndScalar.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Median3DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExtendedDepthOfFocusVarianceProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanOfPixelsAboveThreshold.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SubtractImageFromScalar.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PushAs.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NClosestPoints.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Median2DSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetMeanSquaredError.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/OutOfIntensityRange.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/BottomHatSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ReplaceIntensity.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumOctagon.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/NeighborsOfNeighbors.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DetectMinima3DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetRampZ.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GenerateNNearestNeighborsMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Sobel.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/StandardDeviationSphere.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GetCenterOfMass.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GPUProperties.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Different.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/VoronoiLabeling.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanOfTouchingNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ExtendedDepthOfFocusTenengradProjection.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ThresholdShanbhag.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanIntensityMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ReduceLabelsToCentroids.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Mean3DBox.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MeanSquaredError.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/GenerateBinaryOverlapMatrix.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Crop3D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/PointIndexListToMesh.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/AverageDistanceOfNFarOffPoints.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/SetPlane.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/MinimumOfTouchingNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/DivideImages.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/ModeOfTouchingNeighborsMap.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/CentroidsOfBackgroundAndLabels.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/class-use/Translate2D.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/class-use/CLIJ2MacroExtensions.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/class-use/ProcessableInTiles.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/class-use/CLIJUtilities.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/class-use/HasClassifiedInputOutput.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/package-use.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/helptypes/package-use.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/converters/implementations/package-use.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/legacy/package-use.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/plugins/package-use.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/net/haesleinhuepf/clij2/utilities/package-use.html... Building index for all the packages and classes... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/overview-tree.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/index-all.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/deprecated-list.html... Building index for all classes... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/allclasses-frame.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/allclasses-noframe.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/index.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/overview-summary.html... Generating /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/target/apidocs/help-doc.html... 10 warnings [WARNING] Javadoc Warnings [WARNING] javadoc: warning - Error fetching URL: https://javadoc.scijava.org/ImageJ1/ [WARNING] javadoc: warning - Error fetching URL: https://javadoc.scijava.org/MorphoLibJ/ [WARNING] javadoc: warning - Error fetching URL: https://javadoc.scijava.org/Eclipse/ [WARNING] javadoc: warning - Error fetching URL: https://javadoc.scijava.org/JGraphT/ [WARNING] javadoc: warning - Error fetching URL: https://javadoc.scijava.org/JOML/ [WARNING] javadoc: warning - Error fetching URL: https://javadoc.scijava.org/Javassist/ [WARNING] /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/src/main/java/net/haesleinhuepf/clij2/CLIJ2.java:732: warning - @return tag has no arguments. [WARNING] /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/src/main/java/net/haesleinhuepf/clij2/CLIJ2.java:744: warning - @return tag has no arguments. [WARNING] /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/src/main/java/net/haesleinhuepf/clij2/CLIJ2.java:744: warning - @return tag cannot be used in method with void return type. [WARNING] /home/christopher.schmied/HT_Docs/Repositories/clijTest/clij2/src/main/java/net/haesleinhuepf/clij2/plugins/CustomOperation.java:28: warning - @maarzt is an unknown tag. [INFO] Building jar: /home/christopher.schmied/HTDocs/Repositories/clijTest/clij2/target/clij2-2.5.3.0-javadoc.jar [INFO] [INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ clij2 --- [INFO] Skipping packaging of the test-jar [INFO] [INFO] --- maven-failsafe-plugin:2.22.2:integration-test (default) @ clij2 --- [INFO] No tests to run. [INFO] [INFO] --- maven-failsafe-plugin:2.22.2:verify (default) @ clij2_ --- [INFO] Failsafe report directory: /home/christopher.schmied/HTDocs/Repositories/clijTest/clij2/target/failsafe-reports [INFO] [INFO] --- maven-gpg-plugin:1.5:sign (sign-artifacts) @ clij2 --- gpg: no default secret key: No secret key gpg: signing failed: No secret key [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 17.043 s [INFO] Finished at: 2022-08-03T17:34:36+02:00 [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal org.apache.maven.plugins:maven-gpg-plugin:1.5:sign (sign-artifacts) on project clij2: Exit code: 2 -> [Help 1] org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-gpg-plugin:1.5:sign (sign-artifacts) on project clij2: Exit code: 2 at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:954) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288) at org.apache.maven.cli.MavenCli.main (MavenCli.java:192) at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:498) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) Caused by: org.apache.maven.plugin.MojoExecutionException: Exit code: 2 at org.apache.maven.plugin.gpg.GpgSigner.generateSignatureForFile (GpgSigner.java:168) at org.apache.maven.plugin.gpg.AbstractGpgSigner.generateSignatureForArtifact (AbstractGpgSigner.java:205) at org.apache.maven.plugin.gpg.GpgSignAttachedMojo.execute (GpgSignAttachedMojo.java:140) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo (DefaultBuildPluginManager.java:137) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:208) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:154) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:146) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:954) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:288) at org.apache.maven.cli.MavenCli.main (MavenCli.java:192) at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:498) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:289) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:229) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:415) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:356) [ERROR] [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException

haesleinhuepf commented 2 years ago

ERROR] Failed to execute goal org.apache.maven.plugins:maven-gpg-plugin

Ok, you cannot sign it because your gpg is not set up. Please try this instead:

https://github.com/clij/clij2/blob/master/install.bat#L1

If that works for you, I 'll update the developer documentation.

Thanks for spending time on this!

schmiedc commented 2 years ago

The build and install now works for clij2 with this mvn command. To test this I needed a Fiji that has clij installed. I guess I go about this in some wrong way or is this correct?

Anyways with the clij2 built with mvn clean install -Dgpg.skip plus the clij update site activated I am then able to measure the Standard deviation of my larger 3D image using: Standard Deviation of all on GPU

So I am happy to report that the fix was tested and works.

haesleinhuepf commented 2 years ago

Wonderful. Thanks @schmiedc !