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clingen-data-model / allele

Documentation for data model of ClinGen
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ReferenceSequence resource Notes #91

Closed cbizon closed 9 years ago

cbizon commented 9 years ago

says: The preferred ReferenceSequence to bind an allele to will be the NC_* reference assembly, as defined by RefSeq.

  1. Is this saying that the data model defines the preferred names for an allele? I thought that was up to the implementor?
  2. What about amino acid sequences?
tnavatar commented 9 years ago

That one was my fault. Probably better to delete that statement altogether if you’re working on that page now.

On Apr 14, 2015, at 2:03 PM, cbizon notifications@github.com wrote:

says: The preferred ReferenceSequence to bind an allele to will be the NC_* reference assembly, as defined by RefSeq.

• Is this saying that the data model defines the preferred names for an allele? I thought that was up to the implementor?

• What about amino acid sequences?

— Reply to this email directly or view it on GitHub.

larrybabb commented 9 years ago

I'm working on cleaning up ReferenceSequence right now. So, I can remove that.

From: tnavatar notifications@github.com Reply-To: tnavatar/clingen-data-model <reply+000ea21b9fb9dfdcaa99787c4a5461840460a1617735cac392cf00000001114518ca9 2a169ce0414910e@reply.github.com> Date: Tuesday, April 14, 2015 2:04 PM To: tnavatar/clingen-data-model clingen-data-model@noreply.github.com Subject: Re: [clingen-data-model] ReferenceSequence resource Notes (#91)

That one was my fault. Probably better to delete that statement altogether if you¹re working on that page now.

On Apr 14, 2015, at 2:03 PM, cbizon notifications@github.com wrote:

says: The preferred ReferenceSequence to bind an allele to will be the NC_* reference assembly, as defined by RefSeq.

€ Is this saying that the data model defines the preferred names for an allele? I thought that was up to the implementor?

€ What about amino acid sequences?

‹ Reply to this email directly or view it on GitHub.

‹ Reply to this email directly or view it on GitHub https://github.com/tnavatar/clingen-data-model/issues/91#issuecomment-93001 635 .

tnavatar commented 9 years ago

I’ll also do a pull-and-build before our call, for those of us (like me), working to get what we can done beforehand.

On Apr 14, 2015, at 2:15 PM, larrybabb notifications@github.com wrote:

I'm working on cleaning up ReferenceSequence right now. So, I can remove that.

From: tnavatar notifications@github.com Reply-To: tnavatar/clingen-data-model <reply+000ea21b9fb9dfdcaa99787c4a5461840460a1617735cac392cf00000001114518ca9 2a169ce0414910e@reply.github.com> Date: Tuesday, April 14, 2015 2:04 PM To: tnavatar/clingen-data-model clingen-data-model@noreply.github.com Subject: Re: [clingen-data-model] ReferenceSequence resource Notes (#91)

That one was my fault. Probably better to delete that statement altogether if you¹re working on that page now.

On Apr 14, 2015, at 2:03 PM, cbizon notifications@github.com wrote:

says: The preferred ReferenceSequence to bind an allele to will be the NC_* reference assembly, as defined by RefSeq.

€ Is this saying that the data model defines the preferred names for an allele? I thought that was up to the implementor?

€ What about amino acid sequences?

‹ Reply to this email directly or view it on GitHub.

‹ Reply to this email directly or view it on GitHub https://github.com/tnavatar/clingen-data-model/issues/91#issuecomment-93001 635 .

— Reply to this email directly or view it on GitHub.