clingen-data-model / clinvar-gk-pilot

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Full run of variation_identity from 2023-04-10 does not complete #10

Closed theferrit32 closed 1 year ago

theferrit32 commented 1 year ago

It runs through almost all of the records fine, but stops with 10-20 to go. Main upmap+doseq loop never exits, the CPU is essentially idle, and no more logs are printed, it just hangs forever. Unclear what the issue is because no exceptions are logged that indicate an issue.

Maybe an exception in a thread in the claypool threadpool that isn't surfaced? It's not the http retry loop either, since that has a log statement in it and that isn't present in the log file.

theferrit32 commented 1 year ago

Resolved by https://github.com/clingen-data-model/clinvar-gk-pilot/commit/0836b7358bcc37a9b2f4597d82a02a3de74ae936