For the initial clinvar release in clinvar-combiner, loading the list of variations with clojure.java.jdbc/query results in an out of memory error. Container is limited in k8s to 1 GiB, JVM has default limits though, which seems to be 256 MiB.
The result sets should be processed lazily though so that this is not a major concern. Especially for variation and clinical assertions this is important.
For the initial clinvar release in
clinvar-combiner, loading the list of variations withclojure.java.jdbc/queryresults in an out of memory error. Container is limited in k8s to 1 GiB, JVM has default limits though, which seems to be 256 MiB.The result sets should be processed lazily though so that this is not a major concern. Especially for variation and clinical assertions this is important.