Bug: OutOfMemoryError reading file from bucket

{
  "textPayload": "Exception in thread \"main\" java.lang.OutOfMemoryError: Java heap space\n\t
at java.base/java.util.Arrays.copyOf(Arrays.java:3745)\n\t
at java.base/java.io.ByteArrayOutputStream.toByteArray(ByteArrayOutputStream.java:211)\n\t
at com.google.cloud.storage.spi.v1.HttpStorageRpc.read(HttpStorageRpc.java:727)\n\t
at com.google.cloud.storage.BlobReadChannel$1.call(BlobReadChannel.java:127)\n\t
at com.google.cloud.storage.BlobReadChannel$1.call(BlobReadChannel.java:124)\n\t
at com.google.api.gax.retrying.DirectRetryingExecutor.submit(DirectRetryingExecutor.java:105)\n\t
at com.google.cloud.RetryHelper.run(RetryHelper.java:76)\n\t
at com.google.cloud.RetryHelper.runWithRetries(RetryHelper.java:50)\n\t
at com.google.cloud.storage.BlobReadChannel.read(BlobReadChannel.java:123)\n\t
at java.base/sun.nio.cs.StreamDecoder.readBytes(StreamDecoder.java:274)\n\t
at java.base/sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:326)\n\t
at java.base/sun.nio.cs.StreamDecoder.read(StreamDecoder.java:178)\n\t
at java.base/java.io.BufferedReader.fill(BufferedReader.java:161)\n\t
at java.base/java.io.BufferedReader.readLine(BufferedReader.java:326)\n\t
at java.base/java.io.BufferedReader.readLine(BufferedReader.java:392)\n\t
at clojure.core$line_seq.invokeStatic(core.clj:3091)\n\t
at clojure.core$line_seq$fn__5970.invoke(core.clj:3092)\n\t
at clojure.lang.LazySeq.sval(LazySeq.java:42)\n\t
at clojure.lang.LazySeq.seq(LazySeq.java:51)\n\t
at clojure.lang.RT.seq(RT.java:535)\n\t
at clojure.core$seq__5402.invokeStatic(core.clj:137)\n\t
at clojure.core$take$fn__5909.invoke(core.clj:2884)\n\t
at clojure.lang.LazySeq.sval(LazySeq.java:42)\n\t
at clojure.lang.LazySeq.seq(LazySeq.java:51)\n\t
at clojure.lang.RT.seq(RT.java:535)\n\t
at clojure.core$seq__5402.invokeStatic(core.clj:137)\n\t
at clojure.core$map$fn__5866.invoke(core.clj:2746)\n\t
at clojure.lang.LazySeq.sval(LazySeq.java:42)\n\t
at clojure.lang.LazySeq.seq(LazySeq.java:51)\n\t
at clojure.lang.RT.seq(RT.java:535)\n\t
at clojure.core$seq__5402.invokeStatic(core.clj:137)\n\t
at clojure.core$filter$fn__5893.invoke(core.clj:2809)",
  "insertId": "weqrm0jv4why73vl",
  "resource": {
    …
  },
  "timestamp": "2022-08-16T21:51:39.027764132Z",
  "severity": "ERROR",
  "labels": {
    "k8s-pod/controller-revision-hash": "clinvar-raw-5c7f76d7c7",
    "k8s-pod/statefulset_kubernetes_io/pod-name": "clinvar-raw-0",
    "k8s-pod/app_kubernetes_io/instance": "clinvar-raw",
    "compute.googleapis.com/resource_name": "gke-genegraph-dev-main-pool-84b97319-mw9y"
  },
  "logName": "projects/clingen-dev/logs/stderr",
  "receiveTimestamp": "2022-08-16T21:51:58.498693293Z"
}
clingen-data-model / clinvar-streams

Bug: OutOfMemoryError reading file from bucket #61
