Some example JSONs - Githubissues

Here are couple of examples of autogenerated Actionability data on our development server.

Example 1:

{
  "jsonMessageVersion" : "AV1",
  "statusPublishFlag" : "Publish",
  "type" : "actionability",
  "affiliation" : {
    "id" : "AWG",
    "name" : "Actionability Working Group"
  },
  "iri" : "http://10.15.55.128/genboreeKB_dev/projects/sameer-project-3/genboree_ac/api/doc/AC013",
  "curationVersion" : "1.0.0",
  "title" : "Lynch Syndrome - MLH1, MSH2, MSH6, PMS2, EPCAM",
  "statusFlag" : "Entered",
  "dateISO8601" : "2017-11-03T13:15:49-05:00",
  "genes" : [
    {
      "symbol" : "MLH1",
      "ontology" : "HGNC",
      "curie" : "HGNC:7127",
      "uri" : "HGNC7127"
    },
    {
      "symbol" : "MSH2",
      "ontology" : "HGNC",
      "curie" : "HGNC:7325",
      "uri" : "HGNC7325"
    },
    {
      "symbol" : "MSH6",
      "ontology" : "HGNC",
      "curie" : "HGNC:7329",
      "uri" : "HGNC7329"
    },
    {
      "symbol" : "PMS2",
      "ontology" : "HGNC",
      "curie" : "HGNC:9122",
      "uri" : "HGNC9122"
    },
    {
      "symbol" : "EPCAM",
      "ontology" : "HGNC",
      "curie" : "HGNC:11529",
      "uri" : "HGNC11529"
    }
  ],
  "conditions" : [
    {
      "ontology" : "OMIM",
      "curie" : "OMIM:609310",
      "uri" : "OMIM609310",
      "iri" : "http://purl.obolibrary.org/obo/OMIM_609310"
    },
    {
      "ontology" : "OMIM",
      "curie" : "OMIM:120435",
      "uri" : "OMIM120435",
      "iri" : "http://purl.obolibrary.org/obo/OMIM_120435"
    },
    {
      "ontology" : "OMIM",
      "curie" : "OMIM:614350",
      "uri" : "OMIM614350",
      "iri" : "http://purl.obolibrary.org/obo/OMIM_614350"
    },
    {
      "ontology" : "OMIM",
      "curie" : "OMIM:614337",
      "uri" : "OMIM614337",
      "iri" : "http://purl.obolibrary.org/obo/OMIM_614337"
    },
    {
      "ontology" : "OMIM",
      "curie" : "OMIM:613244",
      "uri" : "OMIM613244",
      "iri" : "http://purl.obolibrary.org/obo/OMIM_613244"
    }
  ],
  "scores" : [
    {
      "Outcome" : "Colorectal cancer ",
      "Severity" : "2",
      "Likelihood" : "3A",
      "Interventions" : [
        {
          "Intervention" : "Surveillance",
          "Effectiveness" : "3A",
          "Nature of Intervention" : "2",
          "Total" : "10AA"
        }
      ]
    },
    {
      "Outcome" : "Endometrial Cancer ",
      "Severity" : "2",
      "Likelihood" : "3A",
      "Interventions" : [
        {
          "Intervention" : "Surveillance",
          "Effectiveness" : "1A",
          "Nature of Intervention" : "2",
          "Total" : "8AA"
        },        {
          "Intervention" : "Risk Reducing Surgery",
          "Effectiveness" : "3B",
          "Nature of Intervention" : "1",
          "Total" : "9AB"
        }
      ]
    }
  ]
}

Example 2:

{
  "jsonMessageVersion" : "AV1",
  "statusPublishFlag" : "Publish",
  "type" : "actionability",
  "affiliation" : {
    "id" : "AWG",
    "name" : "Actionability Working Group"
  },
  "iri" : "http://10.15.55.128/genboreeKB_dev/projects/sameer-project-3/genboree_ac/api/doc/AC016",
  "curationVersion" : "",
  "title" : "MYH-Associated Polyposis - MUTYH (MYH)",
  "statusFlag" : "Entered",
  "dateISO8601" : "2017-11-03T13:20:22-05:00",
  "genes" : [
    {
      "symbol" : "MUTYH (MYH)",
      "ontology" : "HGNC",
      "curie" : "HGNC:7527",
      "uri" : "HGNC7527"
    }
  ],
  "conditions" : [
    {
      "ontology" : "OMIM",
      "curie" : "OMIM:608456",
      "uri" : "OMIM608456",
      "iri" : "http://purl.obolibrary.org/obo/OMIM_608456"
    }
  ],
  "scores" : [
    {
      "Outcome" : "Colorectal cancer ",
      "Severity" : "2",
      "Likelihood" : "3C",
      "Interventions" : [
        {
          "Intervention" : "Regular colonoscopy/polypectomy",
          "Effectiveness" : "3B",
          "Nature of Intervention" : "2",
          "Total" : "10CB"
        }
      ]
    }
  ]
}

clingen-data-model / data-exchange-shared-json

Some example JSONs #26