clingen-data-model / genegraph

Presents an RDF triplestore of gene information using GraphQL APIs
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Added allowances for assertion_ prefix in GV iris #787

Closed tnavatar closed 6 months ago

tnavatar commented 6 months ago

Per Phil's request on Slack:

Phillip Weller 16 days ago I'm probably imagining things - but didn't genegraaph used to return the current GVD record if you passed in an identifier without the timestamp?

8 replies

Tristan Nelson 16 days ago It does, but it doesn't seem to be happy if you add the assertion_ prefix. This link works, for example: https://search.clinicalgenome.org/kb/gene-validity/CGGV:38729563-bf36-48ae-929e-fa69a225de39

Phillip Weller 16 days ago How difficult would it be to also honor the current string format?

Tristan Nelson 16 days ago Including the assertion_ prefix before the UUID, you mean?

Phillip Weller 16 days ago Yes, the one currently in use.

Tristan Nelson 16 days ago I don't think it would be too bad. Is there something specific you're trying to accomplish with a particular timeframe?

Phillip Weller 16 days ago It would be nice if it could do maybe by the 15th of march? Thats when we'll be freezing the code for the Q1 update. Trying to implement a request for Jonathan and it requires always accessing the latest of whatever assertion he bookmarked.

Tristan Nelson 16 days ago That seems feasible, will let you know if that turns out to be a problem.

Phillip Weller 16 days ago Thanks!