clinical-biomarkers / biomarker-issue-repo

Issues repo for the biomarker team.
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Data model to OBO format conversion #7

Open seankim658 opened 3 months ago

seankim658 commented 3 months ago

Darren needs the OBO formatted version of the data in the database.

@DaniallMasood I'll need you to tell me what maps to what for OBO format. Once you give me what has to happen I can build a script to do the conversions.

I have a feeling we might have to go back through some of the data and standardize language (some records are pretty messy). Fortunately, a majority of our data is using pretty standardized language (the rsid records are pretty standardized) but the manually curated ones might need to be edited I'm not sure.