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clinical-biomarkers / biomarker-partnership

CFDE Biomarker Partnership
https://hivelab.biochemistry.gwu.edu/biomarker-partnership
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Biomarker Assessed Entity ID Mapping #138

Open kmartinez834 opened 2 months ago

kmartinez834 commented 2 months ago

I noticed on the Formatting/Contributing Data markdown, in the Biomarker Assessed Entity ID Mapping section, you have both "Carbohydrate" and "Glycan" as Assessed Entity Types. I recommend collapsing these into one "Glycan" entry as follows:

Assessed Entity Types Resource (in order of preference/availability)
Glycan GlyTouCan Accession (GTC) -> Chemical Entities of Biological Interest (ChEBI) -> PubChem (PCCID)

Note: GlyTouCan and ChEBI are sources for PubChem, so I would treat these as primary and PubChem as a secondary resource