issues
search
clinical-genomics-uppsala
/
Twist_DNA
GNU General Public License v3.0
0
stars
5
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bugfix when not using units
#220
jonca79
opened
3 years ago
0
CI: re-add some workflows
#219
Smeds
closed
3 years ago
0
Smeds patch 2
#218
Smeds
closed
3 years ago
0
Changes result file names of HRD and Hotspot files to include samples…
#217
jonca79
closed
3 years ago
0
Added hotspots
#216
jonca79
closed
3 years ago
0
Added positions in hotspot file
#215
jonca79
closed
3 years ago
0
Fix: Header corrected in the Hotspot_cov_files
#214
jonca79
closed
3 years ago
0
Cnv report fix
#213
jonca79
closed
3 years ago
0
Hrd fastq fix
#212
jonca79
closed
3 years ago
0
Update Twist_DNA.smk
#211
Smeds
closed
2 years ago
0
Added real chr17 vcf to tests. Added possibility to skip chr in mutec…
#210
jonca79
closed
3 years ago
0
Make it possible to exclude chr
#209
Smeds
closed
3 years ago
0
Multiplebp maf mm
#208
jonca79
closed
3 years ago
0
Updated filtering criterias for TMB calculation to better handle low …
#207
jonca79
closed
3 years ago
0
Use updated artifact files
#206
jonca79
closed
3 years ago
0
Vardict and Freebayes starts fewer jobs
#205
jonca79
closed
3 years ago
0
Added missing bam index file
#204
jonca79
closed
3 years ago
0
Create artifact files
#203
jonca79
closed
3 years ago
0
Soft filter
#202
jonca79
closed
3 years ago
0
Background
#201
jonca79
closed
3 years ago
0
Specify jenkins-agent version.
#200
Smeds
closed
3 years ago
0
Installation Guide
#199
pyrevo
opened
3 years ago
1
Mutect2 new filtering
#198
jonca79
closed
3 years ago
0
Added two positions in the TERT promotor for depth report
#197
jonca79
closed
3 years ago
0
Change keyserver.
#196
Smeds
closed
3 years ago
0
Rename config variable to move_fastq
#195
Smeds
opened
3 years ago
1
Prep reference data v2
#194
Smeds
closed
2 years ago
0
Hrd
#193
jonca79
closed
3 years ago
0
Update Dockerfile
#192
Smeds
closed
3 years ago
0
Missing folder DATA
#191
Smeds
opened
3 years ago
0
Split up into multiple jobs
#190
Smeds
opened
3 years ago
0
Remove use of original sample sheet
#189
jonca79
opened
3 years ago
0
Added DATA/druggable.hg19.csv empty file to tests
#188
jonca79
closed
3 years ago
0
Fixed path to references
#187
jonca79
closed
3 years ago
0
Update VERSION
#186
Smeds
closed
3 years ago
0
Setup ssl before fetching zip file.
#185
Smeds
closed
3 years ago
0
Add ssl dir.
#184
Smeds
closed
3 years ago
0
Add version for openssl and rsamtools.
#183
Smeds
closed
3 years ago
0
Ju li3
#182
jonca79
closed
3 years ago
0
JuLI
#181
jonca79
closed
3 years ago
0
Singularity to Container. Also rm multiqcheader file from DATA
#180
jonca79
closed
3 years ago
0
Remove multiqc header that is not used anyway. Also removed all insta…
#179
jonca79
closed
3 years ago
0
Update dockerbuild_release_version.yaml
#178
Smeds
closed
3 years ago
0
start using samples.tsv instead
#177
Smeds
opened
3 years ago
0
Try to build release image for dependent softwares. By doing a releas…
#176
Smeds
closed
3 years ago
0
Bugfix
#175
jonca79
closed
3 years ago
0
Update Jenkinsfile
#174
Smeds
closed
3 years ago
0
remove
#173
Smeds
closed
3 years ago
1
Added msisensor-pro with PoN rules and new docker version
#172
jonca79
closed
3 years ago
0
Add beegfs-storage to singularity.
#171
Smeds
closed
3 years ago
0
Next