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clinical-genomics-uppsala
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fluffy_hematology_wgs
Snakemake workflow to analyse hematological malignancies in whole genome data
GNU General Public License v3.0
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chore: dev to update_xlsx
#67
elleira
closed
1 week ago
0
refactor: change outputfiles to yaml and update multiqc version
#66
elleira
closed
1 week ago
0
chore: update output_files to yaml
#65
elleira
closed
1 week ago
0
feat: update xlsx
#64
elleira
opened
1 month ago
0
test: update lint.yaml
#63
elleira
opened
1 month ago
0
feat: filter snvs
#62
elleira
opened
2 months ago
0
refactor: remove project in outputs
#61
elleira
closed
2 months ago
0
fix: update requirements.txt based on working env on marvin
#60
elleira
closed
2 months ago
0
feat: enable running fluffy on miarka
#59
jonca79
opened
4 months ago
0
feat: new sample order
#58
elleira
closed
2 months ago
0
load should be drawn from resource file
#57
nnneeennn
opened
7 months ago
1
Main
#56
nnneeennn
closed
9 months ago
0
chore: release 1.1.0
#55
github-actions[bot]
closed
9 months ago
1
feat: everything
#54
nnneeennn
closed
9 months ago
0
feat: mosdepth
#53
nnneeennn
closed
11 months ago
0
fix: filtering version upgrade
#52
nnneeennn
closed
11 months ago
0
fix: conda and multiqc
#51
elleira
closed
12 months ago
0
feat: vcf filtering on tm exons
#50
nnneeennn
closed
12 months ago
0
feat: dux4-igh rna fusioncatcher count added
#49
nnneeennn
closed
1 year ago
0
chore: update config and schema files
#48
nnneeennn
closed
1 year ago
0
fix: update order of multiqc inputfiles so Fold80 is from HSMetrics n…
#47
elleira
closed
1 year ago
0
fix: replace total seq(samtools) with total reads (picard) in multiqc dna general stats
#46
elleira
closed
1 year ago
0
style: example samplesheet.csv
#45
nnneeennn
closed
1 year ago
0
test: update superlinter to use latest snakefmt
#44
elleira
closed
1 year ago
0
feat: search dux4 fusion in t and upgrade fusioncatcher results to hg38
#43
nnneeennn
closed
1 year ago
0
feat: adds peddy to multiqc report
#42
nnneeennn
closed
1 year ago
0
chore: updated parabricks and prealignment module
#41
nnneeennn
closed
1 year ago
0
feat: html report per chr
#40
nnneeennn
closed
1 year ago
0
style: pr and sr freq added
#39
nnneeennn
closed
1 year ago
0
feat: html report
#38
nnneeennn
closed
1 year ago
0
i don't know what happened here
#37
nnneeennn
closed
1 year ago
0
test
#36
nnneeennn
closed
1 year ago
0
docs: updates to readme
#35
nnneeennn
closed
1 year ago
0
perf: adjusted for new cluster
#34
nnneeennn
closed
1 year ago
0
feat: gatk and svdb
#33
nnneeennn
closed
1 year ago
0
fix: update cnvkit_to_table.py
#32
nnneeennn
closed
1 year ago
0
fix: cnvkit_to_table.py
#31
nnneeennn
closed
1 year ago
0
test: update use of config in integration test
#30
elleira
closed
1 year ago
0
feat: sentieon
#29
hannasoderstrom1
closed
1 year ago
1
chore: add release please
#28
elleira
closed
1 year ago
0
feat: Peddy and Arriba draw
#27
nnneeennn
closed
1 year ago
0
feat: Manta filters ins del dup on length
#26
nnneeennn
closed
1 year ago
0
feat: cnvkit highlights genes in chromosome scatter plots
#25
nnneeennn
closed
1 year ago
0
ci: pindel2vcf extra
#24
elleira
closed
1 year ago
0
test: add tests
#23
elleira
closed
1 year ago
0
refactor: ped names and dna number to multiqc
#22
elleira
closed
1 year ago
0
Manta fixes
#21
nnneeennn
closed
1 year ago
0
Bug Fix and Priority
#20
nnneeennn
closed
1 year ago
0
feat: merged T,N,R pipeline
#19
nnneeennn
closed
1 year ago
0
feat: pipeline is now running with t,n,r
#18
nnneeennn
closed
1 year ago
0
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