Closed clintval closed 3 years ago
Overlapping variant calling regions supplied to VarDictJava will result in duplicate variant calls in the output VAR stream. The post-processing scripts in VarDict handle this with a hash set (https://github.com/AstraZeneca-NGS/VarDict/issues/35#issuecomment-276738191) which we could implement.
Overlapping variant calling regions supplied to VarDictJava will result in duplicate variant calls in the output VAR stream. The post-processing scripts in VarDict handle this with a hash set (https://github.com/AstraZeneca-NGS/VarDict/issues/35#issuecomment-276738191) which we could implement.