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clquezada / tRophicPosition

estimate trophic position using stable isotope data
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Problem with JAGS model using Trophic position #109

Open Elemar12 opened 10 months ago

Elemar12 commented 10 months ago

Hello, my name is Elena Ortega, I am trying to run the Trophic position package to get the trophic position of one consumer in different coastal areas. I use the manual of the package and choose the example titled: tRophicPosition two baselines, full Bayesian model example: Comparing bilagay TP across coastal kelp forests in N Chile. When I run the code: system.time(consumerList_TPmodels <- parallel::parLapply(cluster, consumerList, multiModelTP, adapt = 20000, n.iter = 20000, burnin = 20000, n.chains = 5, model = "twoBaselinesFull"))

I get this error: Error in checkForRemoteErrors(val) : one node produced an error: RUNTIME ERROR: Compilation error on line 12. Cannot evaluate range of counter I

The code from the manual is

system.time(Bilagay_TPmodels <- parallel::parLapply(cluster, BilagayList, multiModelTP, adapt = 20000, n.iter = 20000, burnin = 20000, n.chains = 5, model = "twoBaselinesFull"))

Thank you and best regards,

Elena

Ciaran-Dolan commented 3 months ago

Hi Elena,

Did you get this resolved? I am having similar issues myself.

Cheers,

Ciaran.

clquezada commented 3 months ago

Hello Elena and Ciaran-Dolan

This seems to be a problem with the parallel::parLapply function, not tRophicPosition itself.

Try to run the code without the parallel calculation and let me know if there is still a problem.

Cheers

Claudio

Ciaran-Dolan commented 3 months ago

Hi Claudio,

I seemed to get everything going in the end. It appeared to be an issue with my input in the LoadIsotopeData function.

Thank you for the quick response though, much appreciated!

Cheers,

Ciaran.

On Mon, Jun 24, 2024 at 12:19 PM Claudio Quezada-Romegialli < @.***> wrote:

Hello Elena and Ciaran-Dolan

This seems to be a problem with the parallel::parLapply function, not tRophicPosition itself.

Try to run the code without the parallel calculation and let me know if there is still a problem.

Cheers

Claudio

— Reply to this email directly, view it on GitHub https://github.com/clquezada/tRophicPosition/issues/109#issuecomment-2186334571, or unsubscribe https://github.com/notifications/unsubscribe-auth/BBYWGJI4ZHTEFG2AZCDQLOLZI76ETAVCNFSM6AAAAABJWTTFFSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDCOBWGMZTINJXGE . You are receiving this because you commented.Message ID: @.***>

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All the best, Ciaran Dolan

MRes Marine Biology University of Exeter, Penryn

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