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clulab / bioresources

Data resources from the biomedical domain
Apache License 2.0
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List of KB sources? #15

Closed myedibleenso closed 7 years ago

myedibleenso commented 7 years ago

It sure would be nice to have a document that gives the KB(s) serving as the source for each resource. Perhaps this could just be included in the README?

For example, I was trying to figure out the source KB for a tissue type context mention produced by REACH. The mention was assigned the grounding id tissuelist:TS-0591. Am I right in thinking that http://www.uniprot.org/docs/tisslist.txt is the source associated with the tissuelist namespace?

hickst commented 7 years ago

These have been documented several times in the past in our publications but I'm sure those lists are probably out-of-date. Would a wiki page here answer the issue?

hickst commented 7 years ago

I forgot to answer the question: yes, our tissue KB is derived from the Uniprot Tissue list.

MihaiSurdeanu commented 7 years ago

Yes, a Wiki page would be nice. Mihai

On Tue, Oct 11, 2016 at 7:43 AM, Tom Hicks notifications@github.com wrote:

I forgot to answer the question: yes, our tissue KB is derived from the Uniprot Tissue list.

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hickst commented 7 years ago

Added Wiki page documenting KBs used: https://github.com/clulab/bioresources/wiki/KBs

myedibleenso commented 7 years ago

This is very useful, thanks.

Perhaps it should be linked from the README as well?