Closed JakeWolfe closed 3 years ago
Please make this PR just for the README file, not everything else you changed.
On Wed, Sep 2, 2020 at 11:03 AM Jake Wolfe notifications@github.com wrote:
This is an update to the README for local testing
You can view, comment on, or merge this pull request online at:
https://github.com/clulab/bioresources/pull/39 Commit Summary
- Added update_protein_ontology script
- Added tsv file and cleaned update_protein_ontology
- Added protein fragments
- Format changes
- Merge branch 'proonto' of https://github.com/clulab/bioresources into proonto
- compressed fragments
- Added GGP files.
- with fragments
- Updated README for local testing of REACH
File Changes
- M README.md https://github.com/clulab/bioresources/pull/39/files#diff-04c6e90faac2675aa89e2176d2eec7d8 (9)
- M ner_kb.config https://github.com/clulab/bioresources/pull/39/files#diff-9447216d9b79272a73843fa441067f5b (1)
- M ner_kb.sh https://github.com/clulab/bioresources/pull/39/files#diff-9a142f3b48c6581965f1c35a4f71d6f5 (2)
- A scripts/update_protein_ontology.py https://github.com/clulab/bioresources/pull/39/files#diff-d3820f0c44876f788a755ccba08881d2 (131)
- A src/main/resources/org/clulab/reach/kb/ner/Gene_or_gene_product-OLD.tsv.gz https://github.com/clulab/bioresources/pull/39/files#diff-79a01eb07dea0b2c5bea40e854ed027f (0)
- M src/main/resources/org/clulab/reach/kb/ner/Gene_or_gene_product.tsv.gz https://github.com/clulab/bioresources/pull/39/files#diff-893bd00dd3407ed8e432d99eaad96287 (0)
- A src/main/resources/org/clulab/reach/kb/protein-ontology-fragments.tsv.gz https://github.com/clulab/bioresources/pull/39/files#diff-02b400b76c2a97a0792caab67c40ffb3 (0)
- M src/main/resources/org/clulab/reach/kb/uniprot-proteins.tsv.gz https://github.com/clulab/bioresources/pull/39/files#diff-f01c773c1cfc8373e3cc333959785124 (0)
Patch Links:
- https://github.com/clulab/bioresources/pull/39.patch
- https://github.com/clulab/bioresources/pull/39.diff
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/clulab/bioresources/pull/39, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAI75TTT2SCD5ZJS647NBH3SD2CGFANCNFSM4QTOMPRA .
This is an update to the README for local testing