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clulab / reach

Reach Biomedical Information Extraction
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Docker build issue #799

Closed mjamei closed 11 months ago

mjamei commented 11 months ago

Hi. I'm trying to build reach server from docker with no success. This is the trace. Appreciate any pointers to debug.

ec2-user@ip-172-31-95-69 docker]$ sudo docker build --tag reach:latest .
Sending build context to Docker daemon  4.096kB
Step 1/8 : FROM ubuntu:focal
 ---> 6df894023726
Step 2/8 : RUN apt-get update
 ---> Using cache
 ---> 2b2a27a7e910
Step 3/8 : RUN DEBIAN_FRONTEND="noninteractive" apt-get install -y git curl     vim wget build-essential software-properties-common openjdk-8-jdk
 ---> Using cache
 ---> bfef564b78c9
Step 4/8 : RUN wget -nv https://downloads.lightbend.com/scala/2.12.8/scala-2.12.8.deb &&     dpkg -i scala-2.12.8.deb
 ---> Using cache
 ---> f22bb05d4be7
Step 5/8 : RUN echo "deb https://repo.scala-sbt.org/scalasbt/debian all main" | tee /etc/apt/sources.list.d/sbt.list &&     echo "deb https://repo.scala-sbt.org/scalasbt/debian /" | tee /etc/apt/sources.list.d/sbt_old.list &&     curl -sL "https://keyserver.ubuntu.com/pks/lookup?op=get&search=0x2EE0EA64E40A89B84B2DF73499E82A75642AC823" | apt-key add &&     apt-get update &&     apt-get install sbt=1.4.0
 ---> Using cache
 ---> 6381f0f02001
Step 6/8 : RUN git clone https://github.com/clulab/reach.git &&     cd reach &&     sed -i 's/host = localhost/host = 0.0.0.0/' export/src/main/resources/reference.conf &&     sbt publishLocal
 ---> Running in f2357496fd99
Cloning into 'reach'...
Updating files: 100% (499/499), done.
[info] [launcher] getting org.scala-sbt sbt 1.4.0  (this may take some time)...
downloading https://repo1.maven.org/maven2/org/scala-sbt/sbt/1.4.0/sbt-1.4.0.jar ...
:: loading settings :: url = jar:file:/usr/share/sbt/bin/sbt-launch.jar!/org/apache/ivy/core/settings/ivysettings.xml
        [SUCCESSFUL ] org.scala-sbt#sbt;1.4.0!sbt.jar (25ms)
downloading https://repo1.maven.org/maven2/org/scala-lang/scala-library/2.12.12/scala-library-2.12.12.jar ...
        [SUCCESSFUL ] org.scala-lang#scala-library;2.12.12!scala-library.jar (242ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/main_2.12/1.4.0/main_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#main_2.12;1.4.0!main_2.12.jar (97ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/io_2.12/1.4.0/io_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#io_2.12;1.4.0!io_2.12.jar (56ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/logic_2.12/1.4.0/logic_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#logic_2.12;1.4.0!logic_2.12.jar (13ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/actions_2.12/1.4.0/actions_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#actions_2.12;1.4.0!actions_2.12.jar (25ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/main-settings_2.12/1.4.0/main-settings_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#main-settings_2.12;1.4.0!main-settings_2.12.jar (112ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/run_2.12/1.4.0/run_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#run_2.12;1.4.0!run_2.12.jar (18ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/command_2.12/1.4.0/command_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#command_2.12;1.4.0!command_2.12.jar (27ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/collections_2.12/1.4.0/collections_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#collections_2.12;1.4.0!collections_2.12.jar (32ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/scripted-plugin_2.12/1.4.0/scripted-plugin_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#scripted-plugin_2.12;1.4.0!scripted-plugin_2.12.jar (21ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-lm-integration_2.12/1.4.0/zinc-lm-integration_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-lm-integration_2.12;1.4.0!zinc-lm-integration_2.12.jar (13ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/util-logging_2.12/1.4.0/util-logging_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#util-logging_2.12;1.4.0!util-logging_2.12.jar (30ms)
downloading https://repo1.maven.org/maven2/org/scala-lang/modules/scala-xml_2.12/1.3.0/scala-xml_2.12-1.3.0.jar ...
        [SUCCESSFUL ] org.scala-lang.modules#scala-xml_2.12;1.3.0!scala-xml_2.12.jar(bundle) (35ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/launcher-interface/1.1.5/launcher-interface-1.1.5.jar ...
        [SUCCESSFUL ] org.scala-sbt#launcher-interface;1.1.5!launcher-interface.jar (71ms)
downloading https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/2.8.5/caffeine-2.8.5.jar ...
        [SUCCESSFUL ] com.github.ben-manes.caffeine#caffeine;2.8.5!caffeine.jar (52ms)
downloading https://repo1.maven.org/maven2/io/get-coursier/lm-coursier-shaded_2.12/2.0.0/lm-coursier-shaded_2.12-2.0.0.jar ...
        [SUCCESSFUL ] io.get-coursier#lm-coursier-shaded_2.12;2.0.0!lm-coursier-shaded_2.12.jar (245ms)
downloading https://repo1.maven.org/maven2/org/apache/logging/log4j/log4j-api/2.11.2/log4j-api-2.11.2.jar ...
        [SUCCESSFUL ] org.apache.logging.log4j#log4j-api;2.11.2!log4j-api.jar (20ms)
downloading https://repo1.maven.org/maven2/org/apache/logging/log4j/log4j-core/2.11.2/log4j-core-2.11.2.jar ...
        [SUCCESSFUL ] org.apache.logging.log4j#log4j-core;2.11.2!log4j-core.jar (89ms)
downloading https://repo1.maven.org/maven2/org/apache/logging/log4j/log4j-slf4j-impl/2.11.2/log4j-slf4j-impl-2.11.2.jar ...
        [SUCCESSFUL ] org.apache.logging.log4j#log4j-slf4j-impl;2.11.2!log4j-slf4j-impl.jar (24ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/librarymanagement-core_2.12/1.4.0/librarymanagement-core_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#librarymanagement-core_2.12;1.4.0!librarymanagement-core_2.12.jar (41ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/librarymanagement-ivy_2.12/1.4.0/librarymanagement-ivy_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#librarymanagement-ivy_2.12;1.4.0!librarymanagement-ivy_2.12.jar (59ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/compiler-interface/1.4.0/compiler-interface-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#compiler-interface;1.4.0!compiler-interface.jar (15ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-compile_2.12/1.4.0/zinc-compile_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-compile_2.12;1.4.0!zinc-compile_2.12.jar (13ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/util-relation_2.12/1.4.0/util-relation_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#util-relation_2.12;1.4.0!util-relation_2.12.jar (23ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/util-position_2.12/1.4.0/util-position_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#util-position_2.12;1.4.0!util-position_2.12.jar (21ms)
downloading https://repo1.maven.org/maven2/com/eed3si9n/sjson-new-scalajson_2.12/0.9.0/sjson-new-scalajson_2.12-0.9.0.jar ...
        [SUCCESSFUL ] com.eed3si9n#sjson-new-scalajson_2.12;0.9.0!sjson-new-scalajson_2.12.jar (41ms)
downloading https://repo1.maven.org/maven2/org/scala-lang/scala-reflect/2.12.12/scala-reflect-2.12.12.jar ...
        [SUCCESSFUL ] org.scala-lang#scala-reflect;2.12.12!scala-reflect.jar (108ms)
downloading https://repo1.maven.org/maven2/com/eed3si9n/sjson-new-core_2.12/0.9.0/sjson-new-core_2.12-0.9.0.jar ...
        [SUCCESSFUL ] com.eed3si9n#sjson-new-core_2.12;0.9.0!sjson-new-core_2.12.jar (29ms)
downloading https://repo1.maven.org/maven2/com/eed3si9n/shaded-jawn-parser_2.12/0.9.0/shaded-jawn-parser_2.12-0.9.0.jar ...
        [SUCCESSFUL ] com.eed3si9n#shaded-jawn-parser_2.12;0.9.0!shaded-jawn-parser_2.12.jar (11ms)
downloading https://repo1.maven.org/maven2/com/eed3si9n/shaded-scalajson_2.12/1.0.0-M4/shaded-scalajson_2.12-1.0.0-M4.jar ...
        [SUCCESSFUL ] com.eed3si9n#shaded-scalajson_2.12;1.0.0-M4!shaded-scalajson_2.12.jar (20ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/completion_2.12/1.4.0/completion_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#completion_2.12;1.4.0!completion_2.12.jar (28ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/task-system_2.12/1.4.0/task-system_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#task-system_2.12;1.4.0!task-system_2.12.jar (16ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/tasks_2.12/1.4.0/tasks_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#tasks_2.12;1.4.0!tasks_2.12.jar (11ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/testing_2.12/1.4.0/testing_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#testing_2.12;1.4.0!testing_2.12.jar (17ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/util-tracking_2.12/1.4.0/util-tracking_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#util-tracking_2.12;1.4.0!util-tracking_2.12.jar (8ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/jline3/jline-terminal/3.16.0-sbt-211a082ed6326908dc84ca017ce4430728f18a8a/jline-terminal-3.16.0-sbt-211a082ed6326908dc84ca017ce4430728f18a8a.jar ...
        [SUCCESSFUL ] org.scala-sbt.jline3#jline-terminal;3.16.0-sbt-211a082ed6326908dc84ca017ce4430728f18a8a!jline-terminal.jar (16ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-classpath_2.12/1.4.0/zinc-classpath_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-classpath_2.12;1.4.0!zinc-classpath_2.12.jar (14ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-apiinfo_2.12/1.4.0/zinc-apiinfo_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-apiinfo_2.12;1.4.0!zinc-apiinfo_2.12.jar (16ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc_2.12/1.4.0/zinc_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc_2.12;1.4.0!zinc_2.12.jar (17ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/util-control_2.12/1.4.0/util-control_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#util-control_2.12;1.4.0!util-control_2.12.jar (12ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/jline/jline/2.14.7-sbt-5e51b9d4f9631ebfa29753ce4accc57808e7fd6b/jline-2.14.7-sbt-5e51b9d4f9631ebfa29753ce4accc57808e7fd6b.jar ...
        [SUCCESSFUL ] org.scala-sbt.jline#jline;2.14.7-sbt-5e51b9d4f9631ebfa29753ce4accc57808e7fd6b!jline.jar (12ms)
downloading https://repo1.maven.org/maven2/org/jline/jline-reader/3.16.0/jline-reader-3.16.0.jar ...
        [SUCCESSFUL ] org.jline#jline-reader;3.16.0!jline-reader.jar (14ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/util-interface/1.4.0/util-interface-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#util-interface;1.4.0!util-interface.jar (9ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/core-macros_2.12/1.4.0/core-macros_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#core-macros_2.12;1.4.0!core-macros_2.12.jar (24ms)
downloading https://repo1.maven.org/maven2/org/jline/jline-terminal-jna/3.16.0/jline-terminal-jna-3.16.0.jar ...
        [SUCCESSFUL ] org.jline#jline-terminal-jna;3.16.0!jline-terminal-jna.jar (11ms)
downloading https://repo1.maven.org/maven2/org/jline/jline-terminal-jansi/3.16.0/jline-terminal-jansi-3.16.0.jar ...
        [SUCCESSFUL ] org.jline#jline-terminal-jansi;3.16.0!jline-terminal-jansi.jar (16ms)
downloading https://repo1.maven.org/maven2/com/lmax/disruptor/3.4.2/disruptor-3.4.2.jar ...
        [SUCCESSFUL ] com.lmax#disruptor;3.4.2!disruptor.jar (22ms)
downloading https://repo1.maven.org/maven2/org/scala-lang/scala-compiler/2.12.12/scala-compiler-2.12.12.jar ...
        [SUCCESSFUL ] org.scala-lang#scala-compiler;2.12.12!scala-compiler.jar (411ms)
downloading https://repo1.maven.org/maven2/org/jline/jline-terminal/3.16.0/jline-terminal-3.16.0.jar ...
        [SUCCESSFUL ] org.jline#jline-terminal;3.16.0!jline-terminal.jar (15ms)
downloading https://repo1.maven.org/maven2/org/fusesource/jansi/jansi/1.18/jansi-1.18.jar ...
        [SUCCESSFUL ] org.fusesource.jansi#jansi;1.18!jansi.jar (36ms)
downloading https://repo1.maven.org/maven2/com/swoval/file-tree-views/2.1.4/file-tree-views-2.1.4.jar ...
        [SUCCESSFUL ] com.swoval#file-tree-views;2.1.4!file-tree-views.jar (26ms)
downloading https://repo1.maven.org/maven2/net/java/dev/jna/jna/5.5.0/jna-5.5.0.jar ...
        [SUCCESSFUL ] net.java.dev.jna#jna;5.5.0!jna.jar (67ms)
downloading https://repo1.maven.org/maven2/net/java/dev/jna/jna-platform/5.5.0/jna-platform-5.5.0.jar ...
        [SUCCESSFUL ] net.java.dev.jna#jna-platform;5.5.0!jna-platform.jar (112ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/util-cache_2.12/1.4.0/util-cache_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#util-cache_2.12;1.4.0!util-cache_2.12.jar (23ms)
downloading https://repo1.maven.org/maven2/com/eed3si9n/sjson-new-murmurhash_2.12/0.9.0/sjson-new-murmurhash_2.12-0.9.0.jar ...
        [SUCCESSFUL ] com.eed3si9n#sjson-new-murmurhash_2.12;0.9.0!sjson-new-murmurhash_2.12.jar (11ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/test-agent/1.4.0/test-agent-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#test-agent;1.4.0!test-agent.jar (13ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/test-interface/1.0/test-interface-1.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#test-interface;1.0!test-interface.jar (18ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/compiler-bridge_2.12/1.4.0/compiler-bridge_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#compiler-bridge_2.12;1.4.0!compiler-bridge_2.12.jar (17ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-classfile_2.12/1.4.0/zinc-classfile_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-classfile_2.12;1.4.0!zinc-classfile_2.12.jar (11ms)
downloading https://repo1.maven.org/maven2/com/jcraft/jsch/0.1.54/jsch-0.1.54.jar ...
        [SUCCESSFUL ] com.jcraft#jsch;0.1.54!jsch.jar (23ms)
downloading https://repo1.maven.org/maven2/com/eed3si9n/gigahorse-okhttp_2.12/0.5.0/gigahorse-okhttp_2.12-0.5.0.jar ...
        [SUCCESSFUL ] com.eed3si9n#gigahorse-okhttp_2.12;0.5.0!gigahorse-okhttp_2.12.jar (10ms)
downloading https://repo1.maven.org/maven2/com/squareup/okhttp3/okhttp-urlconnection/3.7.0/okhttp-urlconnection-3.7.0.jar ...
        [SUCCESSFUL ] com.squareup.okhttp3#okhttp-urlconnection;3.7.0!okhttp-urlconnection.jar (16ms)
downloading https://repo1.maven.org/maven2/com/eed3si9n/gigahorse-core_2.12/0.5.0/gigahorse-core_2.12-0.5.0.jar ...
        [SUCCESSFUL ] com.eed3si9n#gigahorse-core_2.12;0.5.0!gigahorse-core_2.12.jar (31ms)
downloading https://repo1.maven.org/maven2/com/squareup/okhttp3/okhttp/3.14.2/okhttp-3.14.2.jar ...
        [SUCCESSFUL ] com.squareup.okhttp3#okhttp;3.14.2!okhttp.jar (43ms)
downloading https://repo1.maven.org/maven2/com/typesafe/ssl-config-core_2.12/0.4.0/ssl-config-core_2.12-0.4.0.jar ...
        [SUCCESSFUL ] com.typesafe#ssl-config-core_2.12;0.4.0!ssl-config-core_2.12.jar(bundle) (21ms)
downloading https://repo1.maven.org/maven2/org/reactivestreams/reactive-streams/1.0.2/reactive-streams-1.0.2.jar ...
        [SUCCESSFUL ] org.reactivestreams#reactive-streams;1.0.2!reactive-streams.jar (9ms)
downloading https://repo1.maven.org/maven2/org/slf4j/slf4j-api/1.7.26/slf4j-api-1.7.26.jar ...
        [SUCCESSFUL ] org.slf4j#slf4j-api;1.7.26!slf4j-api.jar (9ms)
downloading https://repo1.maven.org/maven2/org/scala-lang/modules/scala-parser-combinators_2.12/1.1.2/scala-parser-combinators_2.12-1.1.2.jar ...
        [SUCCESSFUL ] org.scala-lang.modules#scala-parser-combinators_2.12;1.1.2!scala-parser-combinators_2.12.jar(bundle) (13ms)
downloading https://repo1.maven.org/maven2/com/typesafe/config/1.3.3/config-1.3.3.jar ...
        [SUCCESSFUL ] com.typesafe#config;1.3.3!config.jar(bundle) (40ms)
downloading https://repo1.maven.org/maven2/com/squareup/okio/okio/1.17.2/okio-1.17.2.jar ...
        [SUCCESSFUL ] com.squareup.okio#okio;1.17.2!okio.jar (20ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-core_2.12/1.4.0/zinc-core_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-core_2.12;1.4.0!zinc-core_2.12.jar (29ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-persist_2.12/1.4.0/zinc-persist_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-persist_2.12;1.4.0!zinc-persist_2.12.jar (20ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-compile-core_2.12/1.4.0/zinc-compile-core_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-compile-core_2.12;1.4.0!zinc-compile-core_2.12.jar (17ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/zinc-persist-core-assembly/1.4.0/zinc-persist-core-assembly-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#zinc-persist-core-assembly;1.4.0!zinc-persist-core-assembly.jar (112ms)
downloading https://repo1.maven.org/maven2/net/openhft/zero-allocation-hashing/0.10.1/zero-allocation-hashing-0.10.1.jar ...
        [SUCCESSFUL ] net.openhft#zero-allocation-hashing;0.10.1!zero-allocation-hashing.jar(bundle) (13ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/sbinary_2.12/0.5.1/sbinary_2.12-0.5.1.jar ...
        [SUCCESSFUL ] org.scala-sbt#sbinary_2.12;0.5.1!sbinary_2.12.jar (12ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/protocol_2.12/1.4.0/protocol_2.12-1.4.0.jar ...
        [SUCCESSFUL ] org.scala-sbt#protocol_2.12;1.4.0!protocol_2.12.jar (43ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/template-resolver/0.1/template-resolver-0.1.jar ...
        [SUCCESSFUL ] org.scala-sbt#template-resolver;0.1!template-resolver.jar (9ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/ipcsocket/ipcsocket/1.1.0/ipcsocket-1.1.0.jar ...
        [SUCCESSFUL ] org.scala-sbt.ipcsocket#ipcsocket;1.1.0!ipcsocket.jar (12ms)
downloading https://repo1.maven.org/maven2/org/checkerframework/checker-qual/3.4.1/checker-qual-3.4.1.jar ...
        [SUCCESSFUL ] org.checkerframework#checker-qual;3.4.1!checker-qual.jar (19ms)
downloading https://repo1.maven.org/maven2/com/google/errorprone/error_prone_annotations/2.4.0/error_prone_annotations-2.4.0.jar ...
        [SUCCESSFUL ] com.google.errorprone#error_prone_annotations;2.4.0!error_prone_annotations.jar (15ms)
downloading https://repo1.maven.org/maven2/org/scala-sbt/ivy/ivy/2.3.0-sbt-839fad1cdc07cf6fc81364d74c323867230432ad/ivy-2.3.0-sbt-839fad1cdc07cf6fc81364d74c323867230432ad.jar ...
        [SUCCESSFUL ] org.scala-sbt.ivy#ivy;2.3.0-sbt-839fad1cdc07cf6fc81364d74c323867230432ad!ivy.jar (40ms)
:: retrieving :: org.scala-sbt#boot-app
        confs: [default]
        81 artifacts copied, 0 already retrieved
[info] [launcher] getting Scala 2.12.12 (for sbt)...
downloading https://repo1.maven.org/maven2/org/scala-lang/modules/scala-xml_2.12/1.0.6/scala-xml_2.12-1.0.6.jar ...
        [SUCCESSFUL ] org.scala-lang.modules#scala-xml_2.12;1.0.6!scala-xml_2.12.jar(bundle) (33ms)
downloading https://repo1.maven.org/maven2/jline/jline/2.14.6/jline-2.14.6.jar ...
        [SUCCESSFUL ] jline#jline;2.14.6!jline.jar (22ms)
downloading https://repo1.maven.org/maven2/org/fusesource/jansi/jansi/1.12/jansi-1.12.jar ...
        [SUCCESSFUL ] org.fusesource.jansi#jansi;1.12!jansi.jar (20ms)
:: retrieving :: org.scala-sbt#boot-scala
        confs: [default]
        6 artifacts copied, 0 already retrieved
[info] welcome to sbt 1.4.0 (Private Build Java 1.8.0_382)
[info] loading settings for project reach-build from plugins.sbt ...
[info] loading project definition from /reach/project
[warn] There may be incompatibilities among your library dependencies; run 'evicted' to see detailed eviction warnings.
[info] loading settings for project root from build.sbt,version.sbt ...
[info] loading settings for project bioresources from build.sbt ...
[info] loading settings for project processors from build.sbt ...
[info] loading settings for project main from build.sbt ...
[info] loading settings for project causalAssembly from build.sbt ...
[info] loading settings for project context from build.sbt ...
[info] loading settings for project export from build.sbt ...
[info] set current project to reach-exe (in build file:/reach/)
[warn] there are 2 keys that are not used by any other settings/tasks:
[warn]  
[warn] * bioresources / releaseProcess
[warn]   +- /reach/bioresources/build.sbt:11
[warn] * root / releaseProcess
[warn]   +- /reach/build.sbt:125
[warn]  
[warn] note: a setting might still be used by a command; to exclude a key from this `lintUnused` check
[warn] either append it to `Global / excludeLintKeys` or call .withRank(KeyRanks.Invisible) on the key
[info] Wrote /reach/processors/target/scala-2.12/reach-processors_2.12-1.6.3-SNAPSHOT.pom
[info] Wrote /reach/main/target/scala-2.12/reach-main_2.12-1.6.3-SNAPSHOT.pom
[info] Wrote /reach/assembly/target/scala-2.12/reach-assembly_2.12-1.6.3-SNAPSHOT.pom
[info] Wrote /reach/export/target/scala-2.12/reach-export_2.12-1.6.3-SNAPSHOT.pom
[warn] There may be incompatibilities among your library dependencies; run 'evicted' to see detailed eviction warnings.
[warn] There may be incompatibilities among your library dependencies; run 'evicted' to see detailed eviction warnings.
[info] Wrote /reach/target/scala-2.12/reach-exe_2.12-1.6.3-SNAPSHOT.pom
[warn] There may be incompatibilities among your library dependencies; run 'evicted' to see detailed eviction warnings.
[warn] There may be incompatibilities among your library dependencies; run 'evicted' to see detailed eviction warnings.
[info] Main Scala API documentation to /reach/processors/target/scala-2.12/api...
[info] Non-compiled module 'compiler-bridge_2.12' for Scala 2.12.8. Compiling...
[info]   Compilation completed in 24.908s.
model contains 34 documentable templates
[info] Main Scala API documentation successful.
Killed
The command '/bin/sh -c git clone https://github.com/clulab/reach.git &&     cd reach &&     sed -i 's/host = localhost/host = 0.0.0.0/' export/src/main/resources/reference.conf &&     sbt publishLocal' returned a non-zero code: 137
kwalcock commented 11 months ago

Perhaps you found that code: 137 usually indicates out of memory.