Closed nblinov closed 9 years ago
Hi Nikita,
It is usually assumed that the return value of nuclCriterion()
(which defaults to S3/T - 140) is monotonically increasing with temperature. However, this won't be the case when the temperature goes all the way down to zero, where d(S3/T)/dT = (dS3/dT)/T - S3/T^2, which diverges at T=0. But it's still a pretty good assumption that S3 is monotonically increasing. If S3(Tmin)/Tmax > 140 then, assuming S3 is monotonically increasing, there will be no temperature between Tmin and Tmax at which S3(T)/T < 140.
Also, note that
nuclCriterion(outdict[Tmin]['action'], Tmin) < 0
will always evaluates to false in the context of line 823, because this block only ever executes after an error is raised due to nuclCriterion(outdict[Tmin]['action'], Tmin)
and nuclCriterion(outdict[Tmax]['action'], Tmax)
having the same sign.
Hope that helps!
-Max
yep that makes sense. Thanks!
Hi Max,
I'm trying to understand how findAllTransitions works a bit better. One of the key functions it calls is tunnelFromPhase. In that function on line 823 we have
Should that be
or is there some argument as to why the former condition is more useful?