search

clwgg / seqfilter

Filter fasta/fastq(.gz) files by ID and/or sequence length
MIT License
14 stars 2 forks source link

Input tags instead of filter file tags #1

Open foriin opened 6 years ago

foriin commented 6 years ago

Hi! Thank you so much for this very helpful program! But could you possibly rewrite it so that lines with info (starting with ">") were preserved as they were in the input file? This would be especially nice for the negative filtering :)

clwgg commented 6 years ago

Hi! Happy to hear you find seqfilter useful. The exclusion of fasta and fastq comments was an oversight of me, and should be addressed in the latest commit https://github.com/clwgg/seqfilter/commit/ca8764aafb5b6a3d521857ee46e285ae08ba2251.

To update, run git pull and then make in the seqfilter repository clone.

foriin commented 6 years ago

Thank you so much!! Very much appreciated!