Add wildcard support for manual templates

[cm090]

• Confirm wildcard values from config.json are supported
• Ignore explicitly mentioned files when performing wildcard search

Summary by CodeRabbit

• New Features

  • Improved handling of missing files in the autograder process, enhancing file management and error handling.
  • Temporary relocation of found files for better submission directory management.

• Bug Fixes

  • Streamlined control flow and logic for file handling, ensuring more robust operation.

• Style

  • Enhanced readability and consistency in script formatting and control flow across various scripts.

• Chores

  • Minor adjustments such as adding newlines at the end of scripts for better formatting practices.

[coderabbitai[bot]]

Walkthrough

## Walkthrough The pull request introduces a series of modifications across various shell scripts to improve code structure, formatting, and readability. Key changes include enhancements to file handling logic in autograder scripts, adjustments to output redirection syntax, and consistent formatting of conditional statements. Newlines have been added for proper file termination, and sorting of required files has been implemented. Overall, the changes focus on improving the clarity and organization of the scripts without altering their core functionality. ## Changes | Files | Change Summary | |-----------------------------------------|---------------------------------------------------------------------------------------------------| | `templates/exam-manual/run_autograder`, `templates/homework-manual/run_autograder` | Enhanced file handling logic, improved structure, and sorting of required files. | | `templates/exam/run.sh`, `templates/homework/run.sh`, `templates/homework/run_autograder` | Formatting improvements including output redirection syntax adjustments and streamlined conditional statements. | | `templates/exam/setup.sh` | Added a newline at the end of the file for proper termination. |

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