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cma2015 / G2P

G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluation measurements.
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predlist error #5

Open Anilcgpb opened 2 years ago

Anilcgpb commented 2 years ago

Hi can you please help me to solve this error

predlist <- G2PCrossValidation(cross = 10, seed = 1 , cpus = 3, markers = Markers,

  • pheVal = phenotype, modelMethods = c("rrBLUP", "RFC"),
  • outputModel = FALSE, trainedPhenVec = pheVal) 3 cores were used for cross validation ... Start cross validation ... Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: argument "pheVal" is missing, with no default Called from: checkForRemoteErrors(val)
cma2015 commented 2 years ago

Please check the format of pheVal, and make sure the there are phenotypic values in the 'pheVal'.

Anilcgpb commented 2 years ago

I am getting same error with data set attached with the G2P package. is there way to solve this?

cma2015 commented 2 years ago

please check the format of pheVal. Chuang

On Thu, 14 Jul 2022 at 19:01, Anilcgpb @.***> wrote:

Hi can you please help me to solve this error

predlist <- G2PCrossValidation(cross = 10, seed = 1 , cpus = 3, markers = Markers,

-

                          pheVal = phenotype, modelMethods = c("rrBLUP", "RFC"),

-

                          outputModel = FALSE, trainedPhenVec = pheVal)

3 cores were used for cross validation ... Start cross validation ... Error in checkForRemoteErrors(val) : 3 nodes produced errors; first error: argument "pheVal" is missing, with no default Called from: checkForRemoteErrors(val)

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-- 马 闯 旱区作物逆境生物学国家重点实验室 *生命科学学院/西北农林科技大学 陕西 杨凌（712100） Prof. Dr. Chuang Ma Professor of Bioinformatics, State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China. Tel: (029)-87091109 Email: @. @.>*

Anilcgpb commented 2 years ago

pheVal is in vector format