basis for MASS-1.1.0

[zswgzx]

Hi experts,

I'm trying to install MASS 1.1.0, which requires Basis. I've installed all the prerequisites Mass needs, but failed to install it when ccmake gave:

• CMake Error at /opt/cmake-basis/share/find-modules/FindPythonModules.cmake:345 (message): Could NOT find the following Python modules:

  nibabel;numpy;sklearn;sklearn.cluster

  Check if executing /home/xxx/anaconda3/bin/python -c "import " works or set the PythonModulesDIR variable. Alternatively, set the PythonModules_PATH variable(s) instead or the PYTHONPATH environment variable. Unset PythonModules_DIR if you chose an alternative option and before rerunning CMake again. Call Stack (most recent call first): /opt/cmake-basis/share/modules/CommonTools.cmake:56 (_find_package) /opt/cmake-basis/share/modules/CommonTools.cmake:691 (find_package) /opt/cmake-basis/share/modules/ProjectTools.cmake:2181 (basis_find_package) /opt/cmake-basis/share/modules/ProjectTools.cmake:2475 (basis_find_packages) /opt/cmake-basis/share/modules/ProjectTools.cmake:2751 (basis_project_begin) CMakeLists.txt:48 (basis_project_impl)

But I'm able to import all these python libraries from anaconda3. Is there anything I miss?

Also, some settings in ccmake below:

• BASIS_DIR /opt/cmake-basis/lib/cmake/basis CMAKE_BUILD_TYPE Release
  CMAKE_INSTALL_PREFIX /opt/mass
  DEPENDS_DRAMMS_DIR /home/xxx/work/software/dramms-1.4.1
  DEPENDS_PythonInterp_DIR /home/xxx/anaconda3/bin
  DEPENDS_PythonModules_DIR

What would be suitable to put to the last config? Tried /home/xxx/anaconda3/lib, but still the same issue.

Any help would be highly appreciated.

[schuhschuh]

Hi, sorry you encountered this issue. As this should merely be a check of module existence, and there seems to be some variables not set correctly internally, you could try a simple work-around:

Edit the BasisProject.cmake file in the top-level directory of the MASS source tree, and remove / comment out the line PythonModules{nibabel;numpy;sklearn;sklearn.cluster}.

You should then be able to proceed with configuring and installing the software.

[zswgzx]

Works well. Thanks!