cmap / cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
https://clue.io/cmapPy/index.html
BSD 3-Clause "New" or "Revised" License
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Upgrade pandas etc #12

Closed dllahr closed 6 years ago

oena commented 6 years ago

@dllahr And one more slightly more general question-- I'm curious as to why you updated the testing directory structure for the main method to include several subdirectories within pandasGEXpress/tests?

Also the diffs were a little confusing to look at--some files were entirely highlighted but the content looked the same to me for some reason--so if I didn't look closely enough at something let me know.

dllahr commented 6 years ago

That's standard directory structure for tests we've used everywhere else in CMap. I'm not a fan / actively opposed to just dumping everything in one directory, I like to keep things organized by test module and test method.

oena commented 6 years ago

Ok, that's definitely fair (particularly for testing files); looking more closely at these I think they should be fine with previous structure. My original concern was that I set up Travis to run every test_*.py file in each tests directory, and if there are subdirectories that would at minimum need to be adjusted. But turns out that's not applicable here

dllahr commented 6 years ago

FYI / to be clear - the test modules - the python code running the tests - is not in subdirectories. It is just the resources under functional tests that is now structured. Right?

oena commented 6 years ago

Right.

On Thu, Oct 26, 2017 at 4:54 PM Dave Lahr notifications@github.com wrote:

FYI / to be clear - the test modules - the python code running the tests - is not in subdirectories. It is just the resources under functional tests that is now structured. Right?

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levlitichev commented 6 years ago

This can close issue 9, right?