CMap tutorial IPython notebook doesn't open

cmap / cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

https://clue.io/cmapPy/index.html

BSD 3-Clause "New" or "Revised" License

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CMap tutorial IPython notebook doesn't open #66

Closed deniseduma closed 3 years ago

deniseduma commented 3 years ago

I'm trying to open the notebook in my browser but it doesn't open!

cmapPy/tutorials/cmapPy_pandasGEXpress_tutorial.ipynb

Can you fix this, please?

Thanks, Denise

rbf22 commented 3 years ago

I also see this problem:

Notebook validation failed: 'execution_count' is a required property: { "data": { "text/html": "

\n<table border=\"1\" class=\"dataframe\">\n \n <tr style=\"text-align: right;\">\n chd\n \n \n cid\n \n \n \n \n REP.A001_A375_24H:A03\n \n \n REP.A001_A375_24H:A04\n \n \n REP.A001_A375_24H:A05\n \n \n REP.A001_A375_24H:A06\n \n \n REP.A001_A375_24H:A07\n \n \n\n

" }, "output_type": "execute_result", "metadata": {} }

dhamelse commented 3 years ago

I also cannot open the ipynb file.

tnat1031 commented 3 years ago

Hi all, apologies for the delay in addressing this but I think the issue should be fixed in this commit dbcb3eda538d183efe8cb1441d237115527e5b52. The file should now open successfully in a Jupyter notebook session.