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cmap / cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
https://clue.io/cmapPy/index.html
BSD 3-Clause "New" or "Revised" License
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Unable to install pypi version of cmappy - no such file or directory 'pytz-2021.1.dist-info/METADATA'' #82

Closed Zethson closed 1 year ago

Zethson commented 1 year ago 
⋊> ~ pip install git+https://github.com/cmap/cmapPy                                                                                                                           (base) 16:33:33
Collecting git+https://github.com/cmap/cmapPy
  Cloning https://github.com/cmap/cmapPy to /tmp/pip-req-build-gvxss28v
  Running command git clone --filter=blob:none --quiet https://github.com/cmap/cmapPy /tmp/pip-req-build-gvxss28v
  Resolved https://github.com/cmap/cmapPy to commit d1652c3223e49e68e3a71634909342b4a6dbf361
  Preparing metadata (setup.py) ... done
Requirement already satisfied: numpy>=1.11.2 in ./miniconda3/lib/python3.9/site-packages (from cmapPy==3.3.3) (1.21.2)
Requirement already satisfied: pandas>=0.18 in ./miniconda3/lib/python3.9/site-packages (from cmapPy==3.3.3) (1.3.2)
Requirement already satisfied: h5py>=2.6.0 in ./miniconda3/lib/python3.9/site-packages (from cmapPy==3.3.3) (3.7.0)
Requirement already satisfied: requests>=2.13.0 in ./miniconda3/lib/python3.9/site-packages (from cmapPy==3.3.3) (2.31.0)
Requirement already satisfied: six in ./miniconda3/lib/python3.9/site-packages (from cmapPy==3.3.3) (1.16.0)
Requirement already satisfied: python-dateutil>=2.7.3 in ./miniconda3/lib/python3.9/site-packages (from pandas>=0.18->cmapPy==3.3.3) (2.8.2)
Requirement already satisfied: pytz>=2017.3 in ./miniconda3/lib/python3.9/site-packages (from pandas>=0.18->cmapPy==3.3.3) (2021.1)
Requirement already satisfied: charset-normalizer<4,>=2 in ./miniconda3/lib/python3.9/site-packages (from requests>=2.13.0->cmapPy==3.3.3) (3.1.0)
Requirement already satisfied: idna<4,>=2.5 in ./miniconda3/lib/python3.9/site-packages (from requests>=2.13.0->cmapPy==3.3.3) (3.4)
Requirement already satisfied: urllib3<3,>=1.21.1 in ./miniconda3/lib/python3.9/site-packages (from requests>=2.13.0->cmapPy==3.3.3) (1.26.16)
Requirement already satisfied: certifi>=2017.4.17 in ./miniconda3/lib/python3.9/site-packages (from requests>=2.13.0->cmapPy==3.3.3) (2023.7.22)
ERROR: Could not install packages due to an OSError: [Errno 2] No such file or directory: '/home/zeth/miniconda3/lib/python3.9/site-packages/pytz-2021.1.dist-info/METADATA'
Zethson commented 1 year ago

The version on pypi doesn't work either

Zethson commented 1 year ago

NVM, it seems to work in a different environment