Assertion Error occuring on "subsetting GCToo instances" part

cmap / cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

https://clue.io/cmapPy/index.html

BSD 3-Clause "New" or "Revised" License

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Open VangieY opened 4 months ago

VangieY commented 4 months ago

For the code line: vorinostat_a375_gctoo = sg.subset_gctoo(vorinostat_only_gctoo, cid=vorinostat_a375_ids)

cid should be in list format instead of index format

Corrected version: vorinostat_a375_gctoo = sg.subset_gctoo(vorinostat_only_gctoo, cid=vorinostat_a375_ids.to_list())