cmapPy breaks with pandas == 0.20

cmap / cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

https://clue.io/cmapPy/index.html

BSD 3-Clause "New" or "Revised" License

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cmapPy breaks with pandas == 0.20 #9

Closed oena closed 6 years ago

oena commented 6 years ago

Pandas 0.20 changed dtypes slightly; causes some unittests to break. Needs fixing to maintain compatibility with newer versions of requirements packages.

Details on dtype here: https://pandas.pydata.org/pandas-docs/stable/whatsnew.html#uint64-support-improved

dllahr commented 6 years ago

This should be addressed with branch / pull request "upgrade_pandas_etc"