search

cmap / cmapR

Tools for manipulating annotated data matrices
BSD 3-Clause "New" or "Revised" License
85 stars 34 forks source link

L1000 Inference function #56

Closed XiaohanChen97 closed 4 years ago

XiaohanChen97 commented 4 years ago

Hi Ted,

I came from the link website--https://clue.io/contest, which mentioned that an implementation of INFERENCE CHALLENGE was in cmapR.

But I did not find the function about that in cmapR. I was wondering if that really implemented in cmapR or you know any other R packages implement it?

Thank you, Chen

tnat1031 commented 4 years ago

Hi Chen,

Sorry for the confusion. The inference contest code is in cmapR, but it is not on the master branch. It's on a separate branch called 'inf-contest'. Here is the link to the relevant code on that branch: https://github.com/cmap/cmapR/tree/inf-contest/contests

Best, Ted

On Thu, Apr 23, 2020 at 10:11 AM Xiaohan-Chen notifications@github.com wrote:

Hi Ted,

I came from the link website--https://clue.io/contest, which mentioned that an implementation of INFERENCE CHALLENGE was in cmapR.

But I did not find the function about that in cmapR. I was wondering if that really implemented in cmapR or you know any other R packages implement it?

Thank you, Chen

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/cmap/cmapR/issues/56, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAO6F322YADINFIKGOAVUQDROBEB5ANCNFSM4MPCYTPA .

XiaohanChen97 commented 4 years ago

Hi Chen, Sorry for the confusion. The inference contest code is in cmapR, but it is not on the master branch. It's on a separate branch called 'inf-contest'. Here is the link to the relevant code on that branch: https://github.com/cmap/cmapR/tree/inf-contest/contests Best, Ted … On Thu, Apr 23, 2020 at 10:11 AM Xiaohan-Chen @.***> wrote: Hi Ted, I came from the link website--https://clue.io/contest, which mentioned that an implementation of INFERENCE CHALLENGE was in cmapR. But I did not find the function about that in cmapR. I was wondering if that really implemented in cmapR or you know any other R packages implement it? Thank you, Chen — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#56>, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAO6F322YADINFIKGOAVUQDROBEB5ANCNFSM4MPCYTPA .

That really helps me a lot! Thank you very much!