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cmap / cmapR

Tools for manipulating annotated data matrices
BSD 3-Clause "New" or "Revised" License
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Annotating level 3 or level 4 data #57

Closed Joker-Jerome closed 4 years ago

Joker-Jerome commented 4 years ago

Hi there,

Thanks for sharing the code and it works perfectly for me in terms of manipulating the level 5 data. When I was trying to use the level 3 or level 4 data, it seems that I couldn't find a good source for the annotation file. I was wondering where I can find those annotation files so that I can use other levels of data.

Thanks in advance!

Best, Jerome

tnat1031 commented 4 years ago

Hi Jerome,

You can find that annotation file in our GEO repository: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE92742

The file GSE92742_Broad_LINCS_inst_info.txt.gz contains the experimental (column) annotations for level 3 and 4 data.

Best, Ted

On Wed, May 6, 2020 at 10:37 AM Zhaolong(Jerome) Yu < notifications@github.com> wrote:

Hi there,

Thanks for sharing the code and it works perfectly for me in terms of manipulating the level 5 data. When I was trying to use the level 3 or level 4 data, it seems that I couldn't find a good source for the annotation file. I was wondering where I can find those annotation files so that I can use other levels of data.

Thanks in advance!

Best, Jerome

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