Closed swyxio closed 5 years ago
after uninstalling and reinstalling numpy, i now get this different table related error:
/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/scipy/linalg/basic.py:1321: RuntimeWarning: internal gelsd driver lwork query error, required iwork dimension not returned. This is likely the result of LAPACK bug 0038, fixed in LAPACK 3.2.2 (released July 21, 2010). Falling back to 'gelss' driver.
x, resids, rank, s = lstsq(a, b, cond=cond, check_finite=False)
Traceback (most recent call last):
File "run_experiment.py", line 207, in <module>
timings,
File "run_experiment.py", line 41, in run_experiment
exp.perform_cluster(dim)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/experiments/ICA.py", line 80, in perform_cluster
preprocess=False)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/data/loader.py", line 226, in reload_from_hdf
df = pd.read_hdf(hdf_path, hdf_ds_name)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/pandas/io/pytables.py", line 394, in read_hdf
return store.select(key, auto_close=auto_close, **kwargs)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/pandas/io/pytables.py", line 741, in select
return it.get_result()
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/pandas/io/pytables.py", line 1483, in get_result
results = self.func(self.start, self.stop, where)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/pandas/io/pytables.py", line 734, in func
columns=columns)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/pandas/io/pytables.py", line 2928, in read
ax = self.read_index('axis%d' % i, start=_start, stop=_stop)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/pandas/io/pytables.py", line 2523, in read_index
_, index = self.read_index_node(getattr(self.group, key), **kwargs)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/pandas/io/pytables.py", line 2621, in read_index_node
data = node[start:stop]
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/tables/vlarray.py", line 685, in __getitem__
return self.read(start, stop, step)
File "/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/tables/vlarray.py", line 821, in read
listarr = self._read_array(start, stop, step)
File "tables/hdf5extension.pyx", line 2155, in tables.hdf5extension.VLArray._read_array
ValueError: cannot set WRITEABLE flag to True of this array
/Users/swyx/Desktop/OMSCS/ML/ASSIGNMENT3/swyx-a3/py3/lib/python3.7/site-packages/sklearn/externals/joblib/externals/cloudpickle/cloudpickle.py:47: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
ok so it seems the version numbers conflict a lot especiallywhen it comes to numpy. you have 1.15 but a lot of things assume 1.16 (the current version at time of writing).
so you have to uninstall and reinstall everything again: https://stackoverflow.com/questions/11248073/what-is-the-easiest-way-to-remove-all-packages-installed-by-pip
my requirements from pip freeze:
cycler==0.10.0
kiwisolver==1.0.1
kneed==0.2.4
matplotlib==3.0.3
mock==2.0.0
numexpr==2.6.9
numpy==1.16.2
pandas==0.24.2
pbr==5.1.3
pyparsing==2.3.1
python-dateutil==2.8.0
pytz==2018.9
scikit-learn==0.20.3
scikit-optimize==0.5.2
scipy==1.2.1
seaborn==0.9.0
six==1.12.0
tables==3.5.1
xlrd==1.2.0
probably too late for us but a few of us are getting this cryptic error:
this sounds like a situation where tables dont work? or is there a way to resolve this?