Related to issue #124 , I am not able to get any alignment from the hssp database via rsync or ftp. On the other hand, same procedure but for hssp3 works without problem.
$ curl -O ftp://anonymous@ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 49462 0 0 0 0 0 0 --:--:-- 0:00:02 --:--:-- 0
curl: (78) RETR response: 550
$ curl -O ftp://ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 49462 0 0 0 0 0 0 --:--:-- 0:00:02 --:--:-- 0
curl: (78) RETR response: 550
$ gftp ftp://ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2
gftp: ftp://ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2: nodename nor servname provided, or not known
ftp>
$ rsync -avz rsync://rsync.cmbi.umcn.nl/hssp/2oob.hssp.bz2 .
receiving file list ... done
rsync: send_files failed to open "/2oob.hssp.bz2" (in hssp): Permission denied (13)
sent 38 bytes received 164 bytes 134.67 bytes/sec
total size is 94443 speedup is 467.54
rsync error: some files could not be transferred (code 23) at /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-54.120.1/rsync/main.c(1404) [generator=2.6.9]
$ rsync -avz rsync://rsync.cmbi.umcn.nl/hssp3/2oob.hssp.bz2 .
receiving file list ... done
2oob.hssp.bz2
sent 38 bytes received 95227 bytes 63510.00 bytes/sec
total size is 95072 speedup is 1.00
Related to issue #124 , I am not able to get any alignment from the
hssp
database via rsync or ftp. On the other hand, same procedure but forhssp3
works without problem.