Access HSSP Database

[brianjimenez]

Related to issue #124 , I am not able to get any alignment from the hssp database via rsync or ftp. On the other hand, same procedure but for hssp3 works without problem.

$ curl -O ftp://anonymous@ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0 49462    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
curl: (78) RETR response: 550

$ curl -O ftp://ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
  0 49462    0     0    0     0      0      0 --:--:--  0:00:02 --:--:--     0
curl: (78) RETR response: 550

$ gftp ftp://ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2
gftp: ftp://ftp.cmbi.umcn.nl/pub/molbio/data/hssp/1ppe.hssp.bz2: nodename nor servname provided, or not known
ftp> 

$ rsync -avz rsync://rsync.cmbi.umcn.nl/hssp/2oob.hssp.bz2 .
receiving file list ... done
rsync: send_files failed to open "/2oob.hssp.bz2" (in hssp): Permission denied (13)

sent 38 bytes  received 164 bytes  134.67 bytes/sec
total size is 94443  speedup is 467.54
rsync error: some files could not be transferred (code 23) at /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-54.120.1/rsync/main.c(1404) [generator=2.6.9]

$ rsync -avz rsync://rsync.cmbi.umcn.nl/hssp3/2oob.hssp.bz2 .
receiving file list ... done
2oob.hssp.bz2

sent 38 bytes  received 95227 bytes  63510.00 bytes/sec
total size is 95072  speedup is 1.00

[cbaakman]

I'm sorry, the permissions seemed to be messed up. I fixed them. rsync should work now.

[brianjimenez]

Thank you for the quick action!