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cmbi
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kmad
Knowledge based multiple sequence alignment for intrinsically disordered proteins
http://www.cmbi.ru.nl/kmad
GNU General Public License v3.0
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update occurences fails
#41
joannalange
closed
6 years ago
1
Use docker
#40
cbaakman
closed
7 years ago
0
Use auto
#39
joannalange
closed
8 years ago
1
Refactor custom features
#38
jonblack
opened
8 years ago
0
Remove seq data
#37
joannalange
closed
8 years ago
8
Remove files generated during the build
#36
jonblack
closed
8 years ago
5
Fasta parser improvements
#35
jonblack
closed
8 years ago
2
Remove feature_analysis namespace
#34
jonblack
closed
8 years ago
0
[EPIC] Optimisation improvements
#33
jonblack
opened
8 years ago
0
[EPIC] Design improvements
#32
jonblack
opened
8 years ago
0
Improve comments in code
#31
jonblack
opened
8 years ago
2
Use the highest speed optimisation compiler flag
#30
jonblack
closed
8 years ago
0
Write features to a conf file instead of encoding them in the sequence
#29
joannalange
opened
9 years ago
0
Allow overlapping slims and domains
#28
joannalange
opened
9 years ago
0
one sequence output (issue 13 from kman-web)
#27
joannalange
closed
9 years ago
1
Output full alignment
#26
joannalange
closed
9 years ago
0
Finish implementing feature analysis
#25
joannalange
closed
8 years ago
0
residues B, X, Z are not included in the profile
#24
joannalange
closed
9 years ago
0
Factor out misc
#23
jonblack
closed
9 years ago
0
Remove CheckIfFileExists and use boost filesystem inline
#22
jonblack
closed
9 years ago
0
Remove vec_util:push_front
#21
jonblack
closed
9 years ago
0
Improve vec_utils functions
#20
jonblack
closed
9 years ago
1
Remove CheckIfContains
#19
jonblack
closed
9 years ago
0
Improve configuration file parsing
#18
jonblack
closed
9 years ago
0
Factor out config file processing from sequence alignment
#17
jonblack
closed
9 years ago
0
Add logging support
#16
jonblack
opened
9 years ago
0
Create a class to represent sequences parsed from a fasta file
#15
jonblack
closed
9 years ago
0
Remove Sequences class
#14
jonblack
closed
9 years ago
0
Create separate module for fasta parsing
#13
jonblack
closed
9 years ago
0
Use the standard library and boost instead of txtproc functions
#12
jonblack
closed
9 years ago
0
Improve parameter checking
#11
jonblack
closed
9 years ago
0
Don't mix tabs and spaces for indentation; use spaces
#10
jonblack
closed
9 years ago
0
Use standard library for exit status
#9
jonblack
closed
9 years ago
0
Remove Makefile from repository
#8
jonblack
closed
9 years ago
0
Problem with autotools + boost
#7
joannalange
closed
10 years ago
1
Improve project structure
#6
jonblack
closed
10 years ago
0
Use autotools
#5
jonblack
closed
10 years ago
0
Remove executable from repository and add to gitignore
#4
jonblack
closed
10 years ago
0
Pass by reference
#3
jonblack
closed
10 years ago
0
Use include guards
#2
jonblack
closed
10 years ago
0
Write unit tests
#1
jonblack
closed
9 years ago
0